Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211887g00001 ATGTCAATGTCCTGCAAGGATGGTAAACCAGGATTGGATAACGGCAAGTATGTCCGTTACACACCTGAGCAGGTTGAGGCCCTTGAGAGGCTCTACCATGACTGCCCTAAACCCAGCTCCATTCGCCGCCAGCAGCTCATCCGCGAGTGCCCAATCCTCTCCAACATTGAGCCCAAGCAGATCAAAGTTTGGTTCCAGAACAGAAGATGTAGGGAGAAGCAGAGGAAAGAGGCTTTGCGCCTTCAGGCTGTGAATAGGAAGCTCACAGCCATGAACAAGCTGCTCATGGAGGAGAATGATAGGTTGCAGAAGCAGGTTTCTCAGTTGGTGTATGAAAATGGCTACTTTCGTCAGCATACCCAAAATACTACTCTTCCAACCAAAGACACAAGCTGTGAATCCGCCGTGACTAGTGGTCAACGCAGCTTGACAAATCAGCATCCCCCCAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCACGAGCCTGCGGCCTAGTGGGTCTAGAACCCACAAGGGTTGCAGAAATCCTCAAAGATCGTCCTTCATGGTTCCGTGATTGCCGAGCTGTTGATGTGCTGAATGTGCTGCCCACAGCAAATGGTGGAACCATAGAGCTGCTTTACATGCAGCTATATGCGCCAACCACGTTGGCACCTGCTCGCGACTTCTGGTTGTTGCGCTACACATCTGTGTTAGAAGATGGAAGCTTAGTGCCTTGGAGTGTTCCTGAAGTATTGCGTCCACTGTATGAATCATCAACAGTGCTGGCTCAGAAGACAACAATGGCGGCCCTACGTCAGCTAAGGCAAATTTCACATGAAGTTTCTCAGTCTAATGTCACTGGTTGGGGCAGACGGCCAGCAGCTCTTCGAGCACTTGGCCAGAGACTGAGCCGGGGTTTCAATGAGGCACTCAATGGATTTACTGATGAGGGATGGTCAATGATTGGTAATGATGGTGTTGACGATGTTACAATTCTAGTGAATTCATCACCTGACAAGTTGATGGGTCTGAATCTTTCCTTTGCCAATGGATTTCCATCTGTCAGTAATGCAGTTTTATGTGCCAAAGCTTCAATGCTGTTACAGAATGTGCCTCCAGCCATTCTGCTGAGGTTCCTGCGGGAGCACAGGTCAGAATGGGCAGACAATAACATGGATGCGTACTCAGCTGCTGCCATTAAAGTTGGTCCTTGTAGCTTATCAGGATCTCGCATAGGAAATTATGGGGGTCAAGTTATTCTTCCTCTAGCCCACACTATTGAGCATGAGGAGTTTCTGGAAGTAATTAAGTTGGAAGGAGTTGCCCATTCTCCTGAAGAAGCAATGATGCCCAGAGAAGTCTTTCTTCTGCAAATGGTACATACCTACTGTGCTTGA 1518 0.4868 MSMSCKDGKPGLDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEALRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNTTLPTKDTSCESAVTSGQRSLTNQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVPWSVPEVLRPLYESSTVLAQKTTMAALRQLRQISHEVSQSNVTGWGRRPAALRALGQRLSRGFNEALNGFTDEGWSMIGNDGVDDVTILVNSSPDKLMGLNLSFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAAAIKVGPCSLSGSRIGNYGGQVILPLAHTIEHEEFLEVIKLEGVAHSPEEAMMPREVFLLQMVHTYCA 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211887g00001 505 Gene3D - 12 80 - -
Stsc211887g00001 505 Pfam Homeodomain 16 74 IPR001356 GO:0003677
Stsc211887g00001 505 CDD bZIP 68 107 - -
Stsc211887g00001 505 MobiDBLite consensus disorder prediction 121 149 - -
Stsc211887g00001 505 ProSiteProfiles 'Homeobox' domain profile. 11 75 IPR001356 GO:0003677
Stsc211887g00001 505 SMART HOX_1 13 79 IPR001356 GO:0003677
Stsc211887g00001 505 FunFam Homeobox-leucine zipper protein REVOLUTA 16 71 - -
Stsc211887g00001 505 Pfam START domain 160 284 IPR002913 GO:0008289
Stsc211887g00001 505 SUPERFAMILY Bet v1-like 151 286 - -
Stsc211887g00001 505 Coils Coil 81 112 - -
Stsc211887g00001 505 ProSiteProfiles START domain profile. 150 284 IPR002913 GO:0008289
Stsc211887g00001 505 SMART START_1 159 360 IPR002913 GO:0008289
Stsc211887g00001 505 SUPERFAMILY Homeodomain-like 13 78 IPR009057 -
Stsc211887g00001 505 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 284 IPR044830 GO:0003700
Stsc211887g00001 505 CDD homeodomain 16 76 IPR001356 GO:0003677
Stsc211887g00001 505 Gene3D - 194 289 IPR023393 -
Stsc211887g00001 505 MobiDBLite consensus disorder prediction 121 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211887g00001 Stsc-Chr211887 3304 6482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211887g00001 1 499 Homeobox Transcription Factor Family AT1G52150 78.159 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc211887g00001 START 4.8e-25 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211887g00001 K09338 - cave:132186143 932.554