Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211885g00003 ATGGAAAACCCGACCTTACCGGAGAACAACAGGCAGGCGGCGGCAGTAGCGGCGGAAGGCGACAGCGTATCCTCCGATGGTTTGAAAGGCGAAGACGGTGAGCGGAACTCAAGCGGCGCGAACCGGTGGCCTCGAGAAGAGACAATGGCGTTGATCAAAATTAGGTCTGAAATGGACGGCGCTTTCAGAGACATCAGCCCCAAAGCCCCTCTCTGGGAACAAGTCTCAAGGAAATTAGGTGAGCTGGGATATGAAAGGAGTGCGAAGAAGTGTAAAGAGAAGTTCGAGAATATTTACAAGTACCATAGGAGGACCAAGGAAGGCCGTTCCGGAAAACGTAACGGAAAAACTTACCGTTTCTTTGATCAACTCGAGGCATTAGACCCACACCCTAACCCCGCTACTCCCAACAATAACGCCGTTATTCAAGATGCCGTTCCGTTTTCCGTTAGGTTCCCAGTTACTGCAATGGAGCATTCCAGTTCCGCCACTTCGTCTTACTCGAGTGGGAGCGGCGGCGGTGATGGTGAAGGTGAAGGTGAAGAGAGGAGGAGGAAGAAGAGGAGGAGGCTGAGGATGTTCTTTGAGGGGCTTATGAGGGAGGTTTTGGAGAAGCAAGAGAGCCTGCAGAGGAAGTTCATGGAAGTACTTGATAAGTGCGACCAAGATCGAATGGCGAGGGAGCAAGCATGGAAGACGGAGGAGCTTGCTAGGATCAAGAAGGAGCGCGAGCTTCTCGCTCAGGAGCGCTCAATTGCCGCCGCCAAGGACGAAGCTGTTATGTCCTTAATAAAAAAGTTTGCAGAAAAGAACAACAATGTCCCGCTTCAATTTCCAGCTGAAAATAACAACCTGAAGGAGAAGGAGAAGGAGAAGGAGAAGGATAAAGAAAAAGAGAAAGAGAAAGAGAAAGACGAAGTTGGGAATGGCATTAATGTTGGGAATTTTGTGCACATGAGTTCTTCGCGGTGGCCGAAGGACGAAGTAGAGGCATTGATAAGGCTGAGGACACAGCTTGATGAACAATTGCAGCAGCAAGGGAATAATAATGGTGGGCCGTCAAAGGGTCCGCTTTGGGAGGAGGTGTCTACGGCGATGAAGGGACTCGGTTACGATCGGAGCGCCAAGAGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTATTTCAAGAGGATGAAGGAGAAGAACAAGAGGAAGCCAGAAGACTCTAAAACATGTCCCTATTATCACCATCTTGAGGCCATATATAGCAAGAAGCCCAGGAATAATAATAAGATCCTTGATGATGATGAAGATGATATGAATAATGATAATAACAAGAAGAACGAGCTGAAGCCTGAAGAGCTTTTGATGCATATCATGAATGGTCAAGAAGAGAGGCAACAGGATCGAGATCAAGATCAAGATCACTCTTCATCTGAAGATGCAGAGAGAGAAAACACGGATCAGAACCATAATGGATATCAGATGGTTAATAATAGTCCTTCTTCCGTAGCAATCATGAGTTAA 1509 0.4765 MENPTLPENNRQAAAVAAEGDSVSSDGLKGEDGERNSSGANRWPREETMALIKIRSEMDGAFRDISPKAPLWEQVSRKLGELGYERSAKKCKEKFENIYKYHRRTKEGRSGKRNGKTYRFFDQLEALDPHPNPATPNNNAVIQDAVPFSVRFPVTAMEHSSSATSSYSSGSGGGDGEGEGEERRRKKRRRLRMFFEGLMREVLEKQESLQRKFMEVLDKCDQDRMAREQAWKTEELARIKKERELLAQERSIAAAKDEAVMSLIKKFAEKNNNVPLQFPAENNNLKEKEKEKEKDKEKEKEKEKDEVGNGINVGNFVHMSSSRWPKDEVEALIRLRTQLDEQLQQQGNNNGGPSKGPLWEEVSTAMKGLGYDRSAKRCKEKWENINKYFKRMKEKNKRKPEDSKTCPYYHHLEAIYSKKPRNNNKILDDDEDDMNNDNNKKNELKPEELLMHIMNGQEERQQDRDQDQDHSSSEDAERENTDQNHNGYQMVNNSPSSVAIMS 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211885g00003 502 MobiDBLite consensus disorder prediction 1 47 - -
Stsc211885g00003 502 Coils Coil 280 306 - -
Stsc211885g00003 502 MobiDBLite consensus disorder prediction 25 41 - -
Stsc211885g00003 502 MobiDBLite consensus disorder prediction 275 319 - -
Stsc211885g00003 502 FunFam Trihelix transcription factor GT-2 324 391 - -
Stsc211885g00003 502 Coils Coil 238 258 - -
Stsc211885g00003 502 MobiDBLite consensus disorder prediction 483 502 - -
Stsc211885g00003 502 ProSiteProfiles Myb-like domain profile. 35 99 IPR001005 -
Stsc211885g00003 502 MobiDBLite consensus disorder prediction 340 359 - -
Stsc211885g00003 502 CDD GT1 41 106 - -
Stsc211885g00003 502 CDD GT1 322 393 - -
Stsc211885g00003 502 Pfam Myb/SANT-like DNA-binding domain 322 415 IPR044822 -
Stsc211885g00003 502 Pfam Myb/SANT-like DNA-binding domain 41 127 IPR044822 -
Stsc211885g00003 502 MobiDBLite consensus disorder prediction 283 308 - -
Stsc211885g00003 502 PANTHER FI21293P1 19 478 - -
Stsc211885g00003 502 ProSiteProfiles Myb-like domain profile. 322 386 IPR001005 -
Stsc211885g00003 502 MobiDBLite consensus disorder prediction 417 502 - -
Stsc211885g00003 502 Gene3D - 43 104 - -
Stsc211885g00003 502 Gene3D - 324 391 - -
Stsc211885g00003 502 SMART sant 320 388 IPR001005 -
Stsc211885g00003 502 SMART sant 39 101 IPR001005 -
Stsc211885g00003 502 MobiDBLite consensus disorder prediction 159 185 - -
Stsc211885g00003 502 MobiDBLite consensus disorder prediction 417 482 - -
Stsc211885g00003 502 FunFam Trihelix transcription factor GT-2 43 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211885g00003 Stsc-Chr211885 26918 29281 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211885g00003 39 416 Trihelix Transcription Factor Family AT1G76880 44.543 8.16e-111 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc211885g00003 Myb_DNA-bind_4 4e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211885g00003 - - aip:107623117 694.115