Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211883g00001 ATGGCGTCTCAGTCATGCGCGGCCGCACTCTCCGGCGGTTTGGCCAACGTCAACTCAACCGCCGCAACCTTCATCTGCGGCCAGCTTGACTCCATTAACCAGAAGCTCACCGACACCACCTATGCCGTCAACAACACCTACCTCCTCTTCTCTGCCTACCTAGTCTTCGCCATGCAGCTCGGCTTTGCCATGCTCTGTGCCGGCTCCGTCCGCGCCAAGAACACCATGAACATCATGCTTACCAATGTTCTCGACGCCGCCGCCGGTGGCCTTTCCTACTACCTCTTCGGCTACGCCTTTGCCTTCGGAGGCCCCTCTAACGGCTTCATCGGCCGCCACTCATTCGGCCTCACGGACTTCCCCTCTCCCTCCGCGGACTACAGCTTCTTTCTCTACCAGTGGGCTTTCGCCATCGCCGCTGCCGGCATCACTAGCGGCTCCATCGCCGAGCGGACGCAGTTCGTCGCCTACCTTATTTACTCCTCCTTCCTAACCGGGTTCGTCTACCCTATCGTTTCTCATTGGTTCTGGTCGTCCGATGGGTGGGCCAGTGCGACCAGAACAAATGGAAGCCTCTTATTCGGATCCGGCGTGATTGATTTCGCTGGATCCGGAGTGGTTCACATGGTCGGCGGTATAGCTGGCCTTTGGGGAGCATTGGTAGAAGGACCACGGATCGGTCGCTTTGACAGAAGTGGCCGGTCCGTGGTCCTTCGAGGCCATAGCGCTTCCCTGGTTGTGCTAGGTTCGTTTTTGTTATGGTTCGGTTGGTACGGTTTCAACCCTGGGTCCTTTCTAACCATTGCGAAAAGCTACGGTGAAAGTGGTGGGTATTACGGACAGTGGAGCGCGATAGGGAGGACAGCTGTCACTACTACATTGGCTGGTTGCACTGCGGCGTTGACTACGTTGTTCAGTAAACGGTTATTGGTTGGACACTGGAACGTGATCGATGTCTGTAACGGTTTGCTTGGTGGTTTCGCTGCCATAACGTCCGGGTGCTCTGTCGTTGAGCCTTGGGCAGCGATTGTCGAATTTGACGACCCGTTGGAGGCAGCGCAGCTCCACGGAGGGTGTGGTGCATGGGGAGTTCTGTTCACGGGACTGTTTGCAAAGAAGAAGTACGTGGCTGAGGTGTACGGCTCCGGGAAGCCTTACGGGTTGTTTATGGGCGGCGGAGGAAAGCTGCTAGCTGCGCAGGTGATACAGATTCTAGTAATTAGCGGGTGGGTGACGGCCACGATGCTGCCGCTGTTTTACGGGCTTCACAAGATGAGGCTGTTGAGGATATCGAGGGAAGATGAGACGGCGGGTATGGACTTGACGAGGCACGGTGGGTTTGCTTATGCCTATCATGATGAAGATGATGGGTTTGCAAAGCCCGCCATGTTTATGATGGGTAGGATTGAGCCCTCTCCTCAGGCCCATCCACAGTGA 1437 0.563 MASQSCAAALSGGLANVNSTAATFICGQLDSINQKLTDTTYAVNNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGYAFAFGGPSNGFIGRHSFGLTDFPSPSADYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASATRTNGSLLFGSGVIDFAGSGVVHMVGGIAGLWGALVEGPRIGRFDRSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTIAKSYGESGGYYGQWSAIGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIVEFDDPLEAAQLHGGCGAWGVLFTGLFAKKKYVAEVYGSGKPYGLFMGGGGKLLAAQVIQILVISGWVTATMLPLFYGLHKMRLLRISREDETAGMDLTRHGGFAYAYHDEDDGFAKPAMFMMGRIEPSPQAHPQ 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211883g00001 478 FunFam Ammonium transporter 25 464 - -
Stsc211883g00001 478 Pfam Ammonium Transporter Family 47 344 IPR024041 GO:0008519|GO:0016020|GO:0072488
Stsc211883g00001 478 Pfam Ammonium Transporter Family 345 449 IPR024041 GO:0008519|GO:0016020|GO:0072488
Stsc211883g00001 478 Gene3D Ammonium transporter AmtB like domains 21 464 IPR029020 -
Stsc211883g00001 478 ProSitePatterns Ammonium transporters signature. 200 225 IPR018047 GO:0008519|GO:0016020|GO:0072488
Stsc211883g00001 478 SUPERFAMILY Ammonium transporter 41 430 - -
Stsc211883g00001 478 PANTHER AMMONIUM TRANSPORTER 345 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211883g00001 Stsc-Chr211883 5919 8400 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211883g00001 23 475 Inorganic Solute Cotransporters AT1G64780 78.737 0.0 758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211883g00001 K03320 K07573 gmx:100797209 800.816