Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211882g00009 ATGTCACAGAGATCGGTGCCGGCGCCGTTCTTGACGAAGACGTATGAGTTGGTGGATGATCATTCAACGGACGACGTGATTTCGTGGGGTGAGAGTGGCAACACTTTTGTGGTGTGGAAGCATGCAGATTTCGCTAAGGATTTGCTTCCTAATTATTTCAAGCACAACAACTTCTCCAGCTTTGTTCGCCAGCTCAACACCTATGGTTTCCGAAAGATTGTGCCAGACAAATGGGAATTTGCCAACGAACATTTCAAGCGAGGCCAAAAGCAGCTTCTCTCCGAGATCAGGCGGCGCAAGACGGCTCACCCTCCGCCGGCGACAGACAAATCCGGTGGCGACGGAAACTCTGTGTTGAACTCAGGCGGCGATGACATGGGTTCGTCCTCCACCTCTTCCCCTGATTCTAAGAACCCGGGATCTGTGGAAACAACAACTACTAACACCAACACCACCGCTCATCATCAGTGCGCGAATTTATCGAGCGAGAACGAGAAATTGAAGAAGGATAACGAGACGCTAAATTGCGAGCTGGCACGTGCGAAAAAGCAGTGCGATGAGTTGGTGGCTTTCTTAACGGACTGCCTTAAGGTGAGTCCTGATCAGATCAACCACATCATGAGGCAAGGAAAATGCGGGTCCACCCATGGTCCGGTCCAATCTGATGACACTCTAGGTGACGATGACGACAAAAAAGAAGTAGGTGAGGCCGCTGGGCCAAGCAATTTGAAATTGTTTGGTGTTTGGTTGAAACACGAGAATCATAACAAGAGAGCCCGCGAAGGCCCAATGGGCTTTGGTGGGCCTCCAGCAAAGGAGTTGAAGAAAAGTACTGCTACTAGTGCTAGTGTTGTTGACTTTGGTGGTTCCAATGTTAAGGTGATGATGAAGAGCAGCAAGGTCTGCAGCTGA 912 0.5 MSQRSVPAPFLTKTYELVDDHSTDDVISWGESGNTFVVWKHADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEHFKRGQKQLLSEIRRRKTAHPPPATDKSGGDGNSVLNSGGDDMGSSSTSSPDSKNPGSVETTTTNTNTTAHHQCANLSSENEKLKKDNETLNCELARAKKQCDELVAFLTDCLKVSPDQINHIMRQGKCGSTHGPVQSDDTLGDDDDKKEVGEAAGPSNLKLFGVWLKHENHNKRAREGPMGFGGPPAKELKKSTATSASVVDFGGSNVKVMMKSSKVCS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211882g00009 303 Coils Coil 157 184 - -
Stsc211882g00009 303 MobiDBLite consensus disorder prediction 258 277 - -
Stsc211882g00009 303 MobiDBLite consensus disorder prediction 209 237 - -
Stsc211882g00009 303 Gene3D - 2 100 IPR036388 -
Stsc211882g00009 303 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc211882g00009 303 MobiDBLite consensus disorder prediction 113 154 - -
Stsc211882g00009 303 MobiDBLite consensus disorder prediction 222 237 - -
Stsc211882g00009 303 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc211882g00009 303 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc211882g00009 303 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc211882g00009 303 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc211882g00009 303 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Stsc211882g00009 303 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 220 IPR027725 -
Stsc211882g00009 303 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc211882g00009 303 MobiDBLite consensus disorder prediction 99 154 - -
Stsc211882g00009 303 FunFam Heat stress transcription factor B-4 2 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211882g00009 Stsc-Chr211882 30968 33120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211882g00009 2 302 HSF AT4G36990 51.974 7.57e-87 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc211882g00009 HSF_DNA-bind 2.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211882g00009 K09419 - gmx:100791543 372.089