Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211879g00006 ATGGGAATGGATTCTGAGAACAACAATCTCTCCAGATTGCAATGCTCCTATGCCTCCTTGGATGAAGCTTTCGAAATTGGGAAGGAGACTTACAGGGGGCAGCAATACAGCCATATATACTTCGCTCGGCTTCACTTGATGCGCACTCTCTTGTATTCCCTCGTCTCCCAGTGGAAACCCCAAACCCCTGTGTGCACTGTTTTGGGATTGGAAGAGGGAAAAGAGTGTGTCATTGTTGGAACCCTCTATAAGCACATGAAGCTCAAACCTTGCATACTTGATGAGTATTCTAAGGAAAGATCTGCAGTTCCGCTTGCTAAGCCTCATAACTTCATGCACGACGATGATTATCTAGTGTTGGAGGATGAAAGCGGGAGAGTTAAGCTCGGCGGGGATCTCATTTCGCCTTCTGTGTTTGTAACAGGAATTGTAGTTGCCTTACATGGGAAGGAAACGGGGGCAGGTGATTTTTCGGTTTTGGAAGTCCTAGAAGCTGGCCTACCACCACAAATAGAATTCCCTCTTAAATCAAGGGAAGACAAATACATTGTCCTTGTGTCTGGATTAAATGTGGGGAACAGTAATTGTAATCCTCTTCAGTTTCAGCTTCTCATTGATCATATTACAGGCCATTTAGGAGATGAAAAGGAGCAAAGTATTGCATCTCAAATTGTTCATGTTGTCATTGCTGGAAATTCTATTGACATACCACGTGGACTTACTAATGGACAGAATTTGGCTTCAAAGGATCTCTCAAGGATAGCTGAGCCAATAAAAGAACTGGATATTTTGTTGAATCAGATTGCGGCTGGTTTGCCTTTGGATATAATGCCTGGACCGAATGACCCTGCTAATTTCTCATTACCACAGCAGCCATTGCATAGATGCCTTTTTCCTGGTTCATCCGCCTATAACACCTTTAGATCTTGTACAAATCCTCATTCTTTTGAGCTTGATAATATCAGGTTTCTTGGCACATCTGGTCAGAATGTAGATGATCTTGAGAAGTATTCTGATGCAAAAGATAAACTTGAATTTATGGAAAGGACACTAAGGTGGAGGCATATAGCACCCACAGCACCAAATACTCTTGGATGCTATCCTTATACTGATAAGGATCCCTTCTTCATTGAGAGCTGTCCTCATGTGTACTTTGTTGGCAATCAAGATAAATATGAATCTCGTGTCATAAAGGGATCTGAAGGGCAGTTCGTGAGACTCATAAGCGTCCCGAAATTCAGTGAATCTGGAGTTGCAGTTGTGGTAAATTTGAGGGATCTTGAATGTCATCCTCTCAGTTTTGGAACTCAATTCAGCTCATAA 1323 0.424 MGMDSENNNLSRLQCSYASLDEAFEIGKETYRGQQYSHIYFARLHLMRTLLYSLVSQWKPQTPVCTVLGLEEGKECVIVGTLYKHMKLKPCILDEYSKERSAVPLAKPHNFMHDDDYLVLEDESGRVKLGGDLISPSVFVTGIVVALHGKETGAGDFSVLEVLEAGLPPQIEFPLKSREDKYIVLVSGLNVGNSNCNPLQFQLLIDHITGHLGDEKEQSIASQIVHVVIAGNSIDIPRGLTNGQNLASKDLSRIAEPIKELDILLNQIAAGLPLDIMPGPNDPANFSLPQQPLHRCLFPGSSAYNTFRSCTNPHSFELDNIRFLGTSGQNVDDLEKYSDAKDKLEFMERTLRWRHIAPTAPNTLGCYPYTDKDPFFIESCPHVYFVGNQDKYESRVIKGSEGQFVRLISVPKFSESGVAVVVNLRDLECHPLSFGTQFSS 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211879g00006 440 CDD MPP_PolD2_C 182 434 IPR041863 -
Stsc211879g00006 440 Gene3D - 41 165 - -
Stsc211879g00006 440 Pfam DNA polymerase alpha/epsilon subunit B 183 391 IPR007185 GO:0003677|GO:0006260
Stsc211879g00006 440 Gene3D - 174 439 - -
Stsc211879g00006 440 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 7 434 IPR024826 -
Stsc211879g00006 440 FunFam DNA polymerase delta subunit 2 41 165 - -
Stsc211879g00006 440 Pfam DNA polymerase delta subunit OB-fold domain 35 162 IPR040663 -
Stsc211879g00006 440 FunFam DNA polymerase delta small subunit 167 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211879g00006 Stsc-Chr211879 34277 38221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211879g00006 1 439 Core DNA Replication Machinery Family AT2G42120 75.171 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211879g00006 K02328 - gmx:100780072 771.541