Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211879g00004 ATGGATACCCGTAAGAGAGGAAGGCCTGAATTCGGATTCAACGTTAACGGAGGATTCAAGAAAAACAAACAAGAATTGGACTCCTTATCATCTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGCTGCCCATTTGGTGAGGGCTGCCACTTCTTGCACTATGTACCTGGTGGCTATAATGCTGTTGCCCAAATGATGAATCTGACACCTGCTTTACCTCAAGCATCTAGAAACGTCGCAGCCCCACCACCGCCTGTCCCTAATGGATCTGCACAGTCTTCTGTTAAAACACGCGTATGCAACAGGTTTAATTCTGCTGAAGGCTGCAAATTTGGTGACAAATGCCATTTTGCCCACGGTGAATGGGAACTTGGCAAGCCTGTTGCTCATTTTGATGATCATCGTGCCATGGGCCCCCCAGCAGTAGTAGGTCGCATGCCTGGTCCTGGTCGAATGGAGCCTCCCCCTGGTCCTGCCACTGGCTTTGGTGCCAATGCTACGGCCAAGATCAGTGTAGAAGCTTCCCTTGCTGGAGCTATCATCGGGAAGGGTGGTGTCAACTCGAAGCAGATTTGTCGGCAAACGGGAGCCAAACTTTCTATTCGAGAGCACGAATCAGATCCAAATCTCAGAAACATAGAACTCGAGGGAAGTTTCGAACAAATAAAGGAGGCAAGCAACATGGTAAAGGAATTACTTTTGACGTTGCAGATGTCTGCTCCCCCTAAATCGAACCAAGGTGGTCCGGGGTCTGCTGGTCCTGGAAGCAACTACAAAACCAAGCTGTGTGAGAATTTTACAAAAGGATCTTGCACTTTTGGAGACAGATGTCACTTTGCGCACGGTGCCGCCGAGTTGCGCAAAGGTGTATGA 891 0.4905 MDTRKRGRPEFGFNVNGGFKKNKQELDSLSSGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAQMMNLTPALPQASRNVAAPPPPVPNGSAQSSVKTRVCNRFNSAEGCKFGDKCHFAHGEWELGKPVAHFDDHRAMGPPAVVGRMPGPGRMEPPPGPATGFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKELLLTLQMSAPPKSNQGGPGSAGPGSNYKTKLCENFTKGSCTFGDRCHFAHGAAELRKGV 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211879g00004 296 Pfam KH domain 174 237 IPR004088 GO:0003723
Stsc211879g00004 296 SMART c3hfinal6 100 127 IPR000571 GO:0046872
Stsc211879g00004 296 SMART c3hfinal6 263 289 IPR000571 GO:0046872
Stsc211879g00004 296 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Stsc211879g00004 296 ProSiteProfiles Type-1 KH domain profile. 171 235 - -
Stsc211879g00004 296 PANTHER CCCH ZINC FINGER/TIS11-RELATED 23 153 IPR045877 GO:0003729
Stsc211879g00004 296 SMART kh_6 170 240 IPR004087 GO:0003676
Stsc211879g00004 296 ProSiteProfiles Zinc finger C3H1-type profile. 100 128 IPR000571 GO:0046872
Stsc211879g00004 296 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Stsc211879g00004 296 SUPERFAMILY CCCH zinc finger 263 293 IPR036855 GO:0046872
Stsc211879g00004 296 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Stsc211879g00004 296 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 161 243 IPR036612 GO:0003723
Stsc211879g00004 296 CDD KH-I_AtC3H36_like 174 239 - -
Stsc211879g00004 296 SUPERFAMILY CCCH zinc finger 100 131 IPR036855 GO:0046872
Stsc211879g00004 296 FunFam Zinc finger CCCH domain-containing protein 259 294 - -
Stsc211879g00004 296 ProSiteProfiles Zinc finger C3H1-type profile. 263 290 IPR000571 GO:0046872
Stsc211879g00004 296 Gene3D - 95 132 - -
Stsc211879g00004 296 Gene3D - 263 294 - -
Stsc211879g00004 296 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Stsc211879g00004 296 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 102 127 IPR000571 GO:0046872
Stsc211879g00004 296 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 264 288 IPR000571 GO:0046872
Stsc211879g00004 296 FunFam Zinc finger CCCH domain-containing protein 95 132 - -
Stsc211879g00004 296 Gene3D K Homology domain, type 1 166 262 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211879g00004 Stsc-Chr211879 19308 22183 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc211879g00004 KH_1 3.5e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211879g00004 - - gmx:100803981 508.064