Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211878g00007 ATGATGGCAACAAACATCAACCAACAACTCTTCTCTCTGTTACTCTTACTGTTCCTTCTCATCCCACTTTCATCATCTCAGCCAGATCAGTTTCTGTATTCCGGATTCAAGAGCGTTGATGCAAAAAACATAACCTTAAACGACATAGCAGAAATCGAGAAAAACGGCGTACTAAGATTAACAAACGACACAAGCAGATTAATGGGTCACGCTTTCTACCCTTCACCATTTCAGCTCAAAGACAAAGCCTCTGGTAAAGTTCTGTCCTTTTCAACTTCCTTCGCTCTCGCTATTGTCCCTGAGTACCCCAAGCTCGGTGGCCATGGCTTAGCCTTCACCATAGCCACTTCAAAAGATCTCAAAGCTCACCCGAGCCAGTACCTGGGTCTCCTCAACCCAGATGATGTTGGTAACTTCACTAACCATCTCTTTGCTGTTGAGTTTGACACTGTTCAAGACTTTGAGTTCGGTGATATTAATGATAACCATGTTGGGATTGATATCAATAGCTTGCAATCCAATGCTTCTGTTAATGCTAGTTACTATCTTGGTGATAATGGGTCAGAGAGATTGCAGGATTTGAATCTCAAGAGTGGGAAACCCATCATGGTTTGGGTTGATTATGATTCTCAGAAGAATCTTCTGAGTGTTACAATGTCTCCAACTTCTTCTAAGCCTAAAAGGGCAACTTTGTCATTTAATGTGGATCTCTCACCCATTTTTCTTGATACTATGTATGTTGGGTTCTCTGCTTCAACAGGGTTGCTTGCTAGTTCTCATTATGTATTGGGTTGGAGCTTTAGAATCAATGGTCCAGCACCAGTTCTTGATCTCGCTGATCTGCCGCAACTTCCGGGTCCGAAGAAGAAGCATAAGTCTCTGATAATTGGGGGTGGATTTGGAAGGGTTTACAAAGGGACATTGCCGAATTCGAGGACCCAGGTGGCCGTAAAGAGAATCTCACATGAATCAAAGCAGGGTCTGAGGGAGTTTATATCGGAAATTGCGAGCATAGGCCGGCTCAGGCACCGGAACTTGGTTCAGTTATTGGGATGGTGCCGGCGCCGTGGAGATCTTTTGCTTGTGTATGATTTTATGGCTAATGGGAGTTTGGATAAGTACTTGTTTGATGAGCCAAAGATTGTCCTGAATTGGGAACAGAGGTTCAAGATCATAAAGGGTGTTGCTTCAGCTCTCTTGTATCTTCATGAGGGCTATGAGCAAGTAGTTATACATAGAGATGTGAAGGCTAGTAATGTGATGCTTGATTCCGAAATGAATGGGAGACTAGGCGATTTCGGGCTAGCGAGATTGTATGAACATGGTGCTAATCCAAGCACAACAAGAGTTGTTGGTACATTGGGGTATTTGGCACCGGAGTTGCCTAGAACAGGAAGGGCAACAACAAGCTCCGACGTGTTTGCGTTCGGCGCGCTTCTCCTAGAGGTAGCTTGCGGTCGGAGGCCTATCGAGCCGAAGGCACTGCCGGAGGAGTTGGTTCTTGTGGATTGCTTGTGGGAGAAGTTCAAAGAAGGGAGAATACTTGACATGGTGGATCCAAGGTTGAATGGGGAATTTGATGAGGATGAGATTCTTATGGTGCTGAAATTAGGGTTGATATGTTCAAATGATAATCCAAATGGAAGGCCTAACATAAGGCAAGTAATGAGGTATTTGGATGGAGAGGTTGAGTTGCCAGATGAGATGAGAATGCATGTAGGTTCAAATCATGAAGGGTTTGATGAGTTCTTGCACTCACTTGCTTCTTCTTCATTTGACACTGGCTCATATATTGGAACTAGAGACATGGATAATAGTTTTACTTCTTTTGGTTATTCTCCTCAGTCACTCACTCAAACTAGAGGAGAAACAAGGTGA 1878 0.4393 MMATNINQQLFSLLLLLFLLIPLSSSQPDQFLYSGFKSVDAKNITLNDIAEIEKNGVLRLTNDTSRLMGHAFYPSPFQLKDKASGKVLSFSTSFALAIVPEYPKLGGHGLAFTIATSKDLKAHPSQYLGLLNPDDVGNFTNHLFAVEFDTVQDFEFGDINDNHVGIDINSLQSNASVNASYYLGDNGSERLQDLNLKSGKPIMVWVDYDSQKNLLSVTMSPTSSKPKRATLSFNVDLSPIFLDTMYVGFSASTGLLASSHYVLGWSFRINGPAPVLDLADLPQLPGPKKKHKSLIIGGGFGRVYKGTLPNSRTQVAVKRISHESKQGLREFISEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDKYLFDEPKIVLNWEQRFKIIKGVASALLYLHEGYEQVVIHRDVKASNVMLDSEMNGRLGDFGLARLYEHGANPSTTRVVGTLGYLAPELPRTGRATTSSDVFAFGALLLEVACGRRPIEPKALPEELVLVDCLWEKFKEGRILDMVDPRLNGEFDEDEILMVLKLGLICSNDNPNGRPNIRQVMRYLDGEVELPDEMRMHVGSNHEGFDEFLHSLASSSFDTGSYIGTRDMDNSFTSFGYSPQSLTQTRGETR 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211878g00007 625 Gene3D Phosphorylase Kinase; domain 1 295 366 - -
Stsc211878g00007 625 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 289 IPR013320 -
Stsc211878g00007 625 Gene3D - 29 270 - -
Stsc211878g00007 625 FunFam L-type lectin-domain containing receptor kinase S.4 366 572 - -
Stsc211878g00007 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672|GO:0006468
Stsc211878g00007 625 Pfam Legume lectin domain 30 280 IPR001220 GO:0030246
Stsc211878g00007 625 FunFam L-type lectin-domain containing receptor kinase S.4 27 275 - -
Stsc211878g00007 625 CDD STKc_IRAK 296 561 - -
Stsc211878g00007 625 CDD lectin_legume_LecRK_Arcelin_ConA 30 271 IPR001220 GO:0030246
Stsc211878g00007 625 ProSiteProfiles Protein kinase domain profile. 289 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211878g00007 625 PANTHER - 21 566 - -
Stsc211878g00007 625 SUPERFAMILY Protein kinase-like (PK-like) 297 568 IPR011009 -
Stsc211878g00007 625 Gene3D Transferase(Phosphotransferase) domain 1 367 577 - -
Stsc211878g00007 625 SMART serkin_6 289 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211878g00007 625 Pfam Protein tyrosine and serine/threonine kinase 297 558 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211878g00007 Stsc-Chr211878 41026 43159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211878g00007 11 566 Receptor kinase-like Gene Family AT3G45410 44.108 5.01e-159 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc211878g00007 PK_Tyr_Ser-Thr 3.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211878g00007 - - gmx:100801247 810.061