Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211875g00001 ATGAATCTCAGCAACGGCAGCGGATCCATGTCGACGGTTACTTCAGGTGCAGCTCTGAAATCCACAGGCGCCATCTCTAACCAGTTTCCGGCGGGTCTCCGGGTCCTTGTTGTGGACGATGATCCCACGTCTCTCATGATTCTCCAGAAAATGCTTCGAATTTGTCGATACGAAGTTACCAAATGCAACAGGGCAGAGATAGCACTCTCACTTCTGCGAGAGAAAAAAAATGGGTTTGACATTGTTATTAGTGATGTGCATATGCCAGACATGGATGGATTTAAATTGTTAGAGCACATTGGCTTGGAAATGGACCTCCCTGTTATCATAATATCTGCAGATGATGATAACAATGTTATTATGAAAGGTATAACATACGGCGCCTGTGATTACTTAATTAAACCTGTTCGCATAGAAGTTTTTAAGAACATATGGCAGCACATTGTTCGGAAGAGAATGAATGAATGGAGAGATATTGAGCTGCCAGAGAGCGCTGAAGAAGGAGATCGACAGCAGAAGGTATCAGATGAATGCAACTGGAGGAGCTCAAAGGAGAGGAGGGATGAGGAAGAAGAAGCAAACAAAAGAGATGACACTAAAACTTTGAAGAAGCCAAGAGTTGTTTGGTCTGTTGTGCTCCATCAACGGTTTGTAGCTGGTGTTAATCAACTGGGAATTAATAAGGCTGTACCCAAAAAGATTCTTGAATTGATGAATGTTCCTGGACTCACCAGAGAAAATATAGCCAGCCACCTTCAAAAGGTTGAGTGGGATTCTCAGCATCAGAGTTACATGAACAATTCTCTCATAAATCCTCATGATGCTGGATTTGGGACAACGTTTTCAAGTAATGGAATTGATCTTCGAACTCTTGCAACTGCTGGCCAACTCCCAGTACAAAGTTTAGCCACACTTCAAGCAGCAGGACACATGCTCGGCAAAAAAACCAGTCCTCATCTTTTGAGACTCCCAGCATCTTTGAGACAGCCCATTGCATCAAATGGAACTTCTAATGGCCTTAAGGGAAGAAATGGGATTGCATGTAGCACCAGACCACCTTGCTACAATCCTATTTCACAAAGCTTTTCAATGATGAATTTTCCAATGAATCAGAACACTGAAATGCCAATCAGCAATTTTCCTCTTGGAAGAACTCCTGGTATATCTAATATCACAACAAAAGGCTCGTTTCAAGAGGAAGTTACTCCTGAAGTTATAGGGGCTGGTGGGTTTGTTCCAAAGTATGACATTTTTGGTGAACTGCAGAAGCCACAAGATTGGGAGATGGGACAAAGTCGGGATGCCAATGTCATGATTGGAACGCCTGTGTTCTCTGTGAGTGAAAGCATGGAGCAAGGCACTATCCAAAATCAACACCTCAATACATTCGATGCTGACAACTGA 1404 0.4295 MNLSNGSGSMSTVTSGAALKSTGAISNQFPAGLRVLVVDDDPTSLMILQKMLRICRYEVTKCNRAEIALSLLREKKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIIISADDDNNVIMKGITYGACDYLIKPVRIEVFKNIWQHIVRKRMNEWRDIELPESAEEGDRQQKVSDECNWRSSKERRDEEEEANKRDDTKTLKKPRVVWSVVLHQRFVAGVNQLGINKAVPKKILELMNVPGLTRENIASHLQKVEWDSQHQSYMNNSLINPHDAGFGTTFSSNGIDLRTLATAGQLPVQSLATLQAAGHMLGKKTSPHLLRLPASLRQPIASNGTSNGLKGRNGIACSTRPPCYNPISQSFSMMNFPMNQNTEMPISNFPLGRTPGISNITTKGSFQEEVTPEVIGAGGFVPKYDIFGELQKPQDWEMGQSRDANVMIGTPVFSVSESMEQGTIQNQHLNTFDADN 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211875g00001 467 MobiDBLite consensus disorder prediction 164 199 - -
Stsc211875g00001 467 SUPERFAMILY Homeodomain-like 201 255 IPR009057 -
Stsc211875g00001 467 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Stsc211875g00001 467 SUPERFAMILY CheY-like 32 157 IPR011006 -
Stsc211875g00001 467 Pfam Myb-like DNA-binding domain 206 254 IPR001005 -
Stsc211875g00001 467 NCBIfam myb-like DNA-binding domain, SHAQKYF class 204 254 IPR006447 GO:0003677
Stsc211875g00001 467 Gene3D - 201 261 - -
Stsc211875g00001 467 CDD REC_typeB_ARR-like 35 149 - -
Stsc211875g00001 467 SMART REC_2 33 145 IPR001789 GO:0000160
Stsc211875g00001 467 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 310 IPR045279 GO:0009736
Stsc211875g00001 467 FunFam Two-component response regulator 33 170 - -
Stsc211875g00001 467 Pfam Response regulator receiver domain 35 141 IPR001789 GO:0000160
Stsc211875g00001 467 FunFam Two-component response regulator 200 263 - -
Stsc211875g00001 467 Gene3D - 33 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211875g00001 Stsc-Chr211875 19464 22701 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211875g00001 307 429 Response Regulator Gene Family AT3G16857 36.434 2.75e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc211875g00001 Response_reg 1.9e-23 CL0304