Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211874g00010 ATGAGTGGTCGCTTTTCTCGCACAATTTATGTTGGCAATTTGCCCTCGGATATAAGAGAATCAGAAATAGAAGATTTATTCTACAAGTATGGGCGTATCATGGATATTGAATTGAAGATTCCACCCCGCCCACCATGTTATTGCTTTGTTGAGTTTGATAATGCTCGGGATGCAGAAGAAGCAATTCGAGGTCGAGATGGGTACAACTTTGATGGTTGTCGTTTAAGGGTGGAGCTTGCCCATGGTGGTAGGGGGCCGTCATCAAGTGATCGCCGTGGCTATGGTGGTGGTGGAGGTGGTGGCAGTGGTGGGGGCCGTTTTGGTGTCTCACGCCATTCTGAATACCGAGTTATTGTTCGTGGACTTCCCTCTTCTGCATCCTGGCAAGACCTGAAGGATCATATGCGAAAAGCTGGTGATGTATGCTTTGCTGAGGTTTCCCGTGATAGCGAAGGGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAATATGCCATTCGGAAACTGGATGACACAGAGTTTAGAAATCCTTGGGCGAGGGCTTATATACGGGTAACTGCTGACATTTGCACACTTTCTCATCTGTATTTGTTTCACATGTAG 612 0.4575 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKIPPRPPCYCFVEFDNARDAEEAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGSGGGRFGVSRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVTADICTLSHLYLFHM 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211874g00010 203 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Stsc211874g00010 203 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 179 IPR000504 GO:0003723
Stsc211874g00010 203 CDD RRM2_SF2_plant_like 115 188 - -
Stsc211874g00010 203 Gene3D - 115 192 IPR012677 -
Stsc211874g00010 203 SUPERFAMILY RNA-binding domain, RBD 6 181 IPR035979 GO:0003676
Stsc211874g00010 203 Gene3D - 2 114 IPR012677 -
Stsc211874g00010 203 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Stsc211874g00010 203 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 180 - -
Stsc211874g00010 203 SMART rrm1_1 116 185 IPR000504 GO:0003723
Stsc211874g00010 203 SMART rrm1_1 8 78 IPR000504 GO:0003723
Stsc211874g00010 203 FunFam serine/arginine-rich splicing factor SR34A-like 115 191 - -
Stsc211874g00010 203 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 188 IPR000504 GO:0003723
Stsc211874g00010 203 FunFam serine/arginine-rich splicing factor SR34A-like 2 114 - -
Stsc211874g00010 203 MobiDBLite consensus disorder prediction 81 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211874g00010 Stsc-Chr211874 42276 44356 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211874g00010 8 173 Eukaryotic Initiation Factors Gene Family AT4G34110 26.744 8.41e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211874g00010 K12890 - gmx:100786491 336.65