Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211874g00005 ATGTCACAACCAAGGCAGAACAAGATGATGATGATGAATCCAAACAGTGCCAAACATGTAACAGGTGACACAACCTATACCAAGATCTTTGTTGGAGGTTTGGCTTGGGAAACAAAAAGAGACACTCTCAAACGTTATTTTGATCAGTTTGGAGAGATCTTAGAAGCTGNNNNNNNNNNTGGAAGATCAAAAGGATATGGCTTTGTAACATTCAAGGACCCAAATTCTGCAATAAGGGCTTGTCAGAATCCATATCCTGTGATAGATGGAAGGAGGGCTAATTGTAATCTTGCAGCTCTTGGTGCACAAAAAATTGATCCATCATCTATGACAGCTAGTAAAAACTTCAGTAACCCTTCTGGGAATACAGCACCAACTCCGGTTCATCAAGGAACCTCCACTTATTCTAATCAGCATATTCCACAGTATACCTTTCCTTATCCACCCTACAGGTATCCTAGTTACCCTCCCCAGCAAGAAGTATACGAAATGAGTTACTATAATGTATTTGGTGGACAACCCTTTCCATTTCGTTGGTTACCAGCATATTACCAACCAATTTATGGCCTAAGTAGACATCAATTTGTGCCAACAACAGCTTATTTGAAAAAGACACAATTCCGTGATATGTCACCTCAGGAGTTCACACCAACTGTTGCTTCATCAGAACCGATTTCAGCTTCTTCATCCATTTCTACCACTGGATTAATAACAGGAACGGTAGATGCAGGAGGAGGAGGATCACCACAAGAACAGAAATCATCTTCAGGTTAA 774 0.4018 MSQPRQNKMMMMNPNSAKHVTGDTTYTKIFVGGLAWETKRDTLKRYFDQFGEILEAXXXXGRSKGYGFVTFKDPNSAIRACQNPYPVIDGRRANCNLAALGAQKIDPSSMTASKNFSNPSGNTAPTPVHQGTSTYSNQHIPQYTFPYPPYRYPSYPPQQEVYEMSYYNVFGGQPFPFRWLPAYYQPIYGLSRHQFVPTTAYLKKTQFRDMSPQEFTPTVASSEPISASSSISTTGLITGTVDAGGGGSPQEQKSSSG 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211874g00005 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 82 IPR000504 GO:0003723
Stsc211874g00005 257 MobiDBLite consensus disorder prediction 220 257 - -
Stsc211874g00005 257 SMART rrm1_1 28 96 IPR000504 GO:0003723
Stsc211874g00005 257 PANTHER BOULE-RELATED 15 213 - -
Stsc211874g00005 257 MobiDBLite consensus disorder prediction 110 137 - -
Stsc211874g00005 257 SUPERFAMILY RNA-binding domain, RBD 19 98 IPR035979 GO:0003676
Stsc211874g00005 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 100 IPR000504 GO:0003723
Stsc211874g00005 257 Gene3D - 1 109 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211874g00005 Stsc-Chr211874 32208 34723 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211874g00005 23 99 C2H2 Transcription Factor Family AT2G19380 39.506 1.45e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211874g00005 - - adu:107469851 387.882