Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211873g00005 ATGTGGCACAAGAGTTGGACTTGGGCGTTTCTAACGCCCCCTGGCGTTTCCAACGCCCCAAGAAAAAGTTGTAGACTGAGGTGGTTTAATCAGTTAGACCCTAGAATTATCAAGAGGGATTTCACTAAGGAAGAAGAGCAGAAAGTCTTAGCAGCTCAAAGGTTGTATGGTAACAAATGGGCTAAAATATCAAGACTCTTTCCTGGCCGTACAGATAATTCTCTTAAGAATCATTGGCATATCATGATGGCTAGGACGCAAAGGGAGCACTCAATTGCCCTTAGAATAAGAAACAAAACGCACACACTTGTTAATCAAATAACTCAAAATGTTTCTGCTACTATTAGATCAAATAATCATGTTGCTGCTACTAATGGATCAACTATCCCAACAAACATTAAAGAATTTTCTTCCACCTATCCAAGCCTCACTACTATGATTGCTTCATCTTCAAGGAGCAATATTCCCATGGATTTAGGGAATAACTCGAGTCATGGATTAAAAATGGGTAATTAA 516 0.3915 MWHKSWTWAFLTPPGVSNAPRKSCRLRWFNQLDPRIIKRDFTKEEEQKVLAAQRLYGNKWAKISRLFPGRTDNSLKNHWHIMMARTQREHSIALRIRNKTHTLVNQITQNVSATIRSNNHVAATNGSTIPTNIKEFSSTYPSLTTMIASSSRSNIPMDLGNNSSHGLKMGN 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211873g00005 171 Pfam Myb-like DNA-binding domain 39 80 IPR001005 -
Stsc211873g00005 171 SUPERFAMILY Homeodomain-like 20 88 IPR009057 -
Stsc211873g00005 171 PANTHER MYB PROTEIN-RELATED 22 120 - -
Stsc211873g00005 171 SMART sant 37 85 IPR001005 -
Stsc211873g00005 171 Gene3D - 40 120 - -
Stsc211873g00005 171 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 87 IPR017930 -
Stsc211873g00005 171 CDD SANT 41 80 IPR001005 -
Stsc211873g00005 171 ProSiteProfiles Myb-like domain profile. 33 83 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211873g00005 Stsc-Chr211873 32445 37189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211873g00005 22 97 MYB Transcription Factor Family AT1G26780 73.684 2.22e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc211873g00005 Myb_DNA-binding 4.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211873g00005 K09422 - gmx:100776882 139.428