Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211873g00002 ATGGGTGTCCACGGTCTCTGGGAACTACTCGCCCCCGTCGGCCGCCGCGTCTCCGTCGAGACCCTCGCCGGAAAAACCCTTGCAGTCGATGCGAGCATATGGATGGTGCAATTCATGAAGGCGATGCGCGATGAGAAGGGCGAAATGGTTCGAAACGCTCACTTGCTTGGCTTCTTTCGTCGAATTTGTAAGCTCTTGTTCCTCCGGACAAAGCCAGTCTTCGTCTTCGACGGCGGAACCCCCGCCCTCAAGCGCCGCACTGTCATCGCCCGCCGCAGGCAGCGTGAGAACGCTCAGGCCAAAGTCCGCAAGACTGCAGAGAAATTACTTCTGAATCACTTAAAGGCATTGAGGTTGAAAGAAATTGCTGATGACGTTAAGAACCAGAGGCTGAAGCAGAAAAGTGATGCCAAGGGACGCAAAAAACCTGATCGGATGGACTTTGTCGATGGTGATCCAGGAAAGAGTAATATGAAAGAGATAAATGAAATGTCTTCAGCTAAACTTGCAGCTACAGAGGAAGGAACTTTCTTGCAAGAATCGAGAAGCTGCAACCAGGAGGAGCTTGATGAAATGTTGGCTGCATCTATATCTGCAGAGGAGAATGGAATGCTAGCCCGGAATGAAGGAGCAACTACTGTAACTAATACTTCAGAGGAAAAATTTGACACAGATGGAGAATTGATACTGCCTTGTGAAAATGAAGTAGATTTAGCTGTTTTAGCTGCTTTACCACAGTCAATGCAACTTGATATTCTTGCAAAGCTTAAAGGAAAGAAAACAGAAGCCCCAGTGGAGGATGTTGAATTGCAAAACCAATGTGAGGTCAATGATAGGGGAAAGGGTAAGGGGATTCTGTTTAGAGAAAGTGACTTGGGTGGTTGTAGCTCAAAATGTGATAATGTGATATCAATAAATGAGAATCAAGACAAAATTGATGAAATGTTAGCAGCCTCTATTGCTGCAGAGGGAAATGCAAATTCTATGAGTAATGCATCAACTTCTTTTGGGGCTTCAGCCATTGAGGAAGAGGATGGTGACTATGATGAAGATGAAGAGATGATACTGCCTGCAATGGATGGTGGAGTTGATCCAGCTGTTCTAGCCTCTTTACCACCATCAATGCAACTGGATCTCCTAGTTCAGATAAGAGAGCGATTAATTGCAGAGAACAGACAAAAGTATCAAAAAGTAAAGAAGGATCCTGCAAAATTTTCTGAGCTACAAATACAAGCTTACCTTAAAACAGTTGCTTTTCGACGGGAGATAGATGAAGTGCAAAAAGCTGCTGCTGAGAGAGGAGTAGGTGGCATCCAGACTTCACGGATTGCATCTGAAGCCAACAGGGAGTACATATTCTCATCATCTTTTACTGGTGACAAACAGTGA 1389 0.4514 MGVHGLWELLAPVGRRVSVETLAGKTLAVDASIWMVQFMKAMRDEKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKLLLNHLKALRLKEIADDVKNQRLKQKSDAKGRKKPDRMDFVDGDPGKSNMKEINEMSSAKLAATEEGTFLQESRSCNQEELDEMLAASISAEENGMLARNEGATTVTNTSEEKFDTDGELILPCENEVDLAVLAALPQSMQLDILAKLKGKKTEAPVEDVELQNQCEVNDRGKGKGILFRESDLGGCSSKCDNVISINENQDKIDEMLAASIAAEGNANSMSNASTSFGASAIEEEDGDYDEDEEMILPAMDGGVDPAVLASLPPSMQLDLLVQIRERLIAENRQKYQKVKKDPAKFSELQIQAYLKTVAFRREIDEVQKAAAERGVGGIQTSRIASEANREYIFSSSFTGDKQ 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211873g00002 462 CDD PIN_XPG_RAD2 2 92 - -
Stsc211873g00002 462 MobiDBLite consensus disorder prediction 129 157 - -
Stsc211873g00002 462 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Stsc211873g00002 462 SUPERFAMILY PIN domain-like 2 107 IPR029060 -
Stsc211873g00002 462 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Stsc211873g00002 462 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Stsc211873g00002 462 MobiDBLite consensus disorder prediction 129 158 - -
Stsc211873g00002 462 FunFam DNA repair protein UVH3 1 148 - -
Stsc211873g00002 462 Pfam Ubiquitin binding region 233 254 IPR025527 -
Stsc211873g00002 462 Pfam Ubiquitin binding region 362 386 IPR025527 -
Stsc211873g00002 462 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Stsc211873g00002 462 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Stsc211873g00002 462 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Stsc211873g00002 462 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 257 - -
Stsc211873g00002 462 SMART xpgn3 1 98 IPR006085 GO:0004518
Stsc211873g00002 462 Gene3D - 1 142 - -
Stsc211873g00002 462 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211873g00002 Stsc-Chr211873 19382 24439 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211873g00002 1 100 Core DNA Replication Machinery Family AT5G26680 37.273 3.02e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211873g00002 K10846 - gmx:100820295 672.93