Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211873g00001 ATGAAGGAGATTGAGCAGGAGAGAACATATGTCAACAAGGCTTCAAATATTGATACAATTTTAAGTGCAGAGAATAATTGTCCATCCCAAAGTTCTGGGGCCAAGCTTGTTGGTACATTAAAAGATATGAATGTTGATCTAGTTGGTGAATGTCAGCAAAATGAGCAATCTGTCTTTGACAAGGATACTTCTATAGACGTTTCCTTTGAATATGATAGCAAGAATGCGCTCAATGATGGTGAAGATGAAATATTTGCTAATTTGGTAGGAGGAAATTCGGGGATAGTGTTTCGTGCTGATGATACTCCAGCAAAAGAACAACCTCCTAATTCAGATTCAGATTGTGAATGGGAAGAAGGAATTGTTGAAGGGAAGAATACCTATATTCCTGGAAACAATAAAGTGGAATGGAATTCTTCTGTTGCTGAAGGGGATAATAATGATGAGAGTGAAGTAGAATGGGAGGAAGGAGATTGTGATGGTAATGGAAGTACCTTATGTTGCCCATCTGAGTCTTGGAAAAAGCCAACTCGAGGTCAATTGGAGGAGGAGTCTAATTTGCAGGAAGCAATTAGGAGGAGTCTTGAGACTGCAGGAGATGGAGAGCTTAAGCACCAATCATCTGTAGATGAGCATTCAAAGGCTGATGAGAACAATTTGGATGTTTTTGGTGCAATGGGTGGTTCATCTTCTCCTAGGGAAGATGGTCCTAAACAAAACGTATTTCATGTAAATGCGGATGGTGGTGGTTATGTCAACTCCCAAACTGATTTTCGTGGGGGTCAGTCAAAGTCATGTGTAGCATCTATTTCAAGTAACCCAGATATATTGATTGACAAGCCTAGTGTACTGAATACATGCTCTCCTTCTGAATATTCGACTTCAGATGCAAATACAATGAAGGACAATGACCATATGGTTGCAGAACAATTGTTGGATAAACATTGTGATGATATTAAGGTATCTTCTGATGGTAACAATTTTTCCAAGGTTAATCCACTTGGTTCCACCGGAAACGAGAAACCTAACTGTAATAATGAATCTCAACCATTGATTAATTCTGATTATAATACCAAGTTTGCCACTCCTTTGATGGAATCATCCTTGAAGGGAACAGAAAATCTTGATATTGGGCCAAAGTTAGCTGCATTGGACAATGATGGAAGTTTCAGTGGAGAAAGAAATAGTAATGTTGTGAAAAATGCAGTTAACACCTCAGGAGATTTTCCAGCACATGTAGATGAGGTTAGATTGGAGGAAGAAATGCGAATACTGGATCAAGAATATAGAAACCTTGAAAATGAGCAGAAGAAACTTGAAAGAAATGCAGAATCTGTGAACAGTGAATTGTTCACAGAATGTCAGGAATTACTGCAAATGTTTGGCTTGCCATATATTATTGCCCCAATGGAAGCTGAAGCACAATGTGCTTTCTTGGAAACTGCAAAACTGGTTGATGGTGTTATAACTGATGATTCTGATGTCCTTCTATTTGGAGCTCGTAGTGTTTACAAGAATATATTTGATGATCGCAAATACGTAGAGACATACTTCATGGAGGACATTGAGAAGGAACTTGGATTGAGCAGAGAAAAATTAGTACGCATGGCACTACTACTTGGGAGTGATTATACTGAAGGTGTAAGTGGGATTGGGATTGTCAATGCTATTGAGGTTGTGAATGCATTTCCTGAGGAAGATGGCCTCATGAAATTCCGGCATGATAGTAAGGAACTAGAGGGATTGCTGGATTATGACCAAGAAATCAAGCAAACCTTTTTTGAGAAACATAGAAATGTTAGCAAGAATTGGCATATCCCGTCTTCTTTTCCAAGTGAGACAGTTATATCTGCGTACTATTCTCCACAAGTTGACAAGTCAACTGAGCCTTTCACCTGGGGAAAGCCAGATCATCTTGTTCTTCGAAAATTGTGCTGGGAGAAATTTGGGTGGACTAGCCAGAAATCAGATGAATTACTAGTACCTGTTCTAAAGGAATATAACAAACACGAGACTCAACTTCGTTTGGAGGCGTTTTATAGTTTCAATGAGCGATTTGCAAAAATTCGTAGCAAGAGAATTACGAAAGCTGTAAAAGGGATTACTGGTAAGCAGCCTTCAGAATTGAAAGATGGTGGGGACAAAAATTTTGAGAATCTAAAGGGGACAAAGGAAAGTCTTGAAAGTTTGAAGAAACCTAAAGTAAAAGAATCAAGGAAAAGGAAGAATGATGGGGACACTCTTGGGAAGGCAATCTCAAAGAAAAAGACAACCACCGATGGTCCTTCTTCAGCTTCTATTATGTCTGGAGTGGAGAATTTACATCCATCTACTCAGACCAAAAAAGACCAATGTGATAGTAATGCATTGATTTCAAATAGAAGTGGGAGGGGAAGAGGAAGAGGAAGAGGCAGAGGTTTGGCAGGAAAAAAAGAAAGGAAAAAGGAGAGTATCATTTATGAATCATCTGAAGCGTCATCTTCTAGTAGTGACACTGATGATCATGTTGATATGTCAGAAGTTTCTCAAGAGGTGCGAAGGTCCGCGCGTTCCAGAAAACCTATTAATTATTCACTTGAGAACCTAGAAGATGAAGAACTGAATGATTCATTTGATACGAGGAATCAATCATCCTTGCGTGAAGATCCATTAGAAGAAAATTTATCTGATATTCCTGGTGGATGTTCGGATGCTGCAACTGGTTTAAGCAGATATAAAGAAAGTGATATGATAAATAGTGCTCAAACCAGGAACTTCCCTAGTGACCTTCTTGAGACGGAAGGTCAGCTTTTTATGGATGCTATTGAAACTACTCATCCTGGAACAGGTGATTGTGATAATATTGTTAATGCTGGAGCTTGTGATGACTACCTTAAACTAGGAGGTGGGTTTTGTTTGGATGATAGTGATGAACCTAGCAATCAGAATGCAGTTGATGGTGCCAATACTGCTGAAAGTGAGGGATTTCCACACTGTTCTGTTATGCCAGATGATACTGACCGTGACAAAAATGGTTCTGATATGCTATTTTCTGGCACAGATAAAGCAAATAGCAAGATGCAAGAGGAGCACACTGCCTACAATGTTAACAACGAGCTAAATGATAACCTTCCAAATGTTTGCAGTGCCAATGATCAACATGAAATGGGGGTCTCTGTACCTGGGAATATTAATCATAATAGTGGAAACTACAATGGGGCATTTAGTGCAATACCATTTTTGAGGAAAAGGAGGAAGAACTAG 3243 0.3913 MKEIEQERTYVNKASNIDTILSAENNCPSQSSGAKLVGTLKDMNVDLVGECQQNEQSVFDKDTSIDVSFEYDSKNALNDGEDEIFANLVGGNSGIVFRADDTPAKEQPPNSDSDCEWEEGIVEGKNTYIPGNNKVEWNSSVAEGDNNDESEVEWEEGDCDGNGSTLCCPSESWKKPTRGQLEEESNLQEAIRRSLETAGDGELKHQSSVDEHSKADENNLDVFGAMGGSSSPREDGPKQNVFHVNADGGGYVNSQTDFRGGQSKSCVASISSNPDILIDKPSVLNTCSPSEYSTSDANTMKDNDHMVAEQLLDKHCDDIKVSSDGNNFSKVNPLGSTGNEKPNCNNESQPLINSDYNTKFATPLMESSLKGTENLDIGPKLAALDNDGSFSGERNSNVVKNAVNTSGDFPAHVDEVRLEEEMRILDQEYRNLENEQKKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAFLETAKLVDGVITDDSDVLLFGARSVYKNIFDDRKYVETYFMEDIEKELGLSREKLVRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLMKFRHDSKELEGLLDYDQEIKQTFFEKHRNVSKNWHIPSSFPSETVISAYYSPQVDKSTEPFTWGKPDHLVLRKLCWEKFGWTSQKSDELLVPVLKEYNKHETQLRLEAFYSFNERFAKIRSKRITKAVKGITGKQPSELKDGGDKNFENLKGTKESLESLKKPKVKESRKRKNDGDTLGKAISKKKTTTDGPSSASIMSGVENLHPSTQTKKDQCDSNALISNRSGRGRGRGRGRGLAGKKERKKESIIYESSEASSSSSDTDDHVDMSEVSQEVRRSARSRKPINYSLENLEDEELNDSFDTRNQSSLREDPLEENLSDIPGGCSDAATGLSRYKESDMINSAQTRNFPSDLLETEGQLFMDAIETTHPGTGDCDNIVNAGACDDYLKLGGGFCLDDSDEPSNQNAVDGANTAESEGFPHCSVMPDDTDRDKNGSDMLFSGTDKANSKMQEEHTAYNVNNELNDNLPNVCSANDQHEMGVSVPGNINHNSGNYNGAFSAIPFLRKRRKN 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211873g00001 1080 FunFam DNA repair protein UVH3 528 581 - -
Stsc211873g00001 1080 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 528 688 IPR036279 -
Stsc211873g00001 1080 Pfam XPG I-region 462 543 IPR006086 GO:0004518
Stsc211873g00001 1080 MobiDBLite consensus disorder prediction 196 238 - -
Stsc211873g00001 1080 MobiDBLite consensus disorder prediction 994 1008 - -
Stsc211873g00001 1080 MobiDBLite consensus disorder prediction 708 753 - -
Stsc211873g00001 1080 CDD H3TH_XPG 531 626 - -
Stsc211873g00001 1080 MobiDBLite consensus disorder prediction 868 887 - -
Stsc211873g00001 1080 MobiDBLite consensus disorder prediction 196 218 - -
Stsc211873g00001 1080 MobiDBLite consensus disorder prediction 142 165 - -
Stsc211873g00001 1080 SUPERFAMILY PIN domain-like 431 543 IPR029060 -
Stsc211873g00001 1080 SMART HhH_4 530 563 IPR008918 GO:0003677|GO:0003824
Stsc211873g00001 1080 ProSitePatterns XPG protein signature 2. 462 476 IPR019974 GO:0016788
Stsc211873g00001 1080 MobiDBLite consensus disorder prediction 828 860 - -
Stsc211873g00001 1080 CDD PIN_XPG_RAD2 445 665 - -
Stsc211873g00001 1080 FunFam DNA repair protein UVH3 408 527 - -
Stsc211873g00001 1080 Gene3D - 411 527 - -
Stsc211873g00001 1080 Gene3D - 528 595 - -
Stsc211873g00001 1080 MobiDBLite consensus disorder prediction 699 895 - -
Stsc211873g00001 1080 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 913 - -
Stsc211873g00001 1080 SMART xpgineu 459 528 IPR006086 GO:0004518
Stsc211873g00001 1080 MobiDBLite consensus disorder prediction 754 794 - -
Stsc211873g00001 1080 MobiDBLite consensus disorder prediction 973 1022 - -
Stsc211873g00001 1080 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 533 548 IPR006084 -
Stsc211873g00001 1080 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 458 475 IPR006084 -
Stsc211873g00001 1080 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 479 499 IPR006084 -
Stsc211873g00001 1080 Coils Coil 415 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211873g00001 Stsc-Chr211873 12615 18994 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211873g00001 453 680 Core DNA Replication Machinery Family AT5G26680 26.496 5.21e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211873g00001 K10846 - gmx:100820295 1103.97