Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211872g00004 ATGGCAGAGTTGTTGAGAAATCCCATCACATTGAAGAAAGCACAAGAAGAAGTTAGAGGGGTTGTGGGGCAAAAACCTAAAGTTGAAGAAAGTGATATCAAGAAAATGGAGTACTTAAAGTATGTGGTGAAAGAATCTCTGAGATTGCATGCACCAGCGCCATTTCTGGCTACTAGAATGACAGCAACTAATGTGAAGCTCAAAGGTTTTGACATTCCAGCCAAAACATTGGTATGCATGAATGCATGGGGCATCCAAAGAGATGGAGAATTTTGGGAAAAACCAGAAGAGTTCATTCCAGAGAGACATGAAAATATCAAAGTTAATTACAATGGTCAAGACTCCCAATTCATAGCATTTGGTTTTGGGAGAAGAGGATGTCCTGGAATGAGTTTTGGACTTGATTCTGCTGAGTATTTGCTTGCTAACCTTCTTCATTGCTTCAATTGGGAGATGCCTCCACAAGGTATTGATATGACTCAGGCAGACGCACTCATTTCTTCCAAAAGAGTCACACTTCATCTCAAGCCAATTCCATTTTCATTCAAATAA 552 0.3986 MAELLRNPITLKKAQEEVRGVVGQKPKVEESDIKKMEYLKYVVKESLRLHAPAPFLATRMTATNVKLKGFDIPAKTLVCMNAWGIQRDGEFWEKPEEFIPERHENIKVNYNGQDSQFIAFGFGRRGCPGMSFGLDSAEYLLANLLHCFNWEMPPQGIDMTQADALISSKRVTLHLKPIPFSFK 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211872g00004 183 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 120 129 IPR017972 GO:0005506|GO:0016705
Stsc211872g00004 183 Gene3D Cytochrome P450 1 177 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211872g00004 183 PRINTS E-class P450 group IV signature 86 104 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211872g00004 183 PRINTS E-class P450 group IV signature 111 127 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211872g00004 183 PRINTS E-class P450 group IV signature 36 52 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211872g00004 183 PRINTS E-class P450 group IV signature 127 145 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211872g00004 183 Pfam Cytochrome P450 2 161 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211872g00004 183 SUPERFAMILY Cytochrome P450 1 178 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211872g00004 183 PANTHER CYTOCHROME P450 71B11-RELATED 1 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211872g00004 Stsc-Chr211872 18739 19573 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211872g00004 1 180 Cytochrome P450 AT3G26270 43.716 1.50e-51 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211872g00004 K20617 - gmx:100785621 254.603