Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211868g00001 ATGGCGGAAGAGCACCGATGCCAAGCTCCGGAAGGCCACAAACTCTGTGCCAATAATTGCGGCTTCTTCGGTAGCACAACCACCATGGACCTCTGTTCCAAGTGCTATAGAGACGTTCTCTTAAAGGAGCAAGAACAAGCCAAGACCAAATCCACCATCGAAACCGCTCTCTCCTCCTCCTCATCCGCAACCGCATCACATCTATCTCCGCCGTCTCCAGCCGTAGATTCCCTCCCTCAACTGCCGGAGCTCATCGTCTCGCCGGAGATCGCGTCGGAATCGTCCGTATCGACGTCTCCAGCGGTCGTATCGGCAGTTCAGGCGAACCGGTGCGCATCGTGCAGGAAACGGATCGGGTTGACCGGTTTTACGTGCAGGTGCGGGATCACGTTTTGCGGGACCCACAGGTACCCGGAGAAGCACGGGTGTGGGTTCGATTTCAAGACCGTAGGGAGGGACGAAATAGCGAGGGCGAATCCCGTGATCAAAGCCAGGAAGCTCGACAAGATTTGA 513 0.5653 MAEEHRCQAPEGHKLCANNCGFFGSTTTMDLCSKCYRDVLLKEQEQAKTKSTIETALSSSSSATASHLSPPSPAVDSLPQLPELIVSPEIASESSVSTSPAVVSAVQANRCASCRKRIGLTGFTCRCGITFCGTHRYPEKHGCGFDFKTVGRDEIARANPVIKARKLDKI 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211868g00001 170 Pfam AN1-like Zinc finger 111 147 IPR000058 GO:0008270
Stsc211868g00001 170 MobiDBLite consensus disorder prediction 52 75 - -
Stsc211868g00001 170 PANTHER AN1-TYPE ZINC FINGER PROTEIN 12 170 - -
Stsc211868g00001 170 FunFam Zinc finger AN1-type containing 6 87 166 - -
Stsc211868g00001 170 SUPERFAMILY AN1-like Zinc finger 101 165 IPR035896 -
Stsc211868g00001 170 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Stsc211868g00001 170 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 61 - -
Stsc211868g00001 170 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Stsc211868g00001 170 ProSiteProfiles Zinc finger AN1-type profile. 105 151 IPR000058 GO:0008270
Stsc211868g00001 170 Gene3D - 1 69 - -
Stsc211868g00001 170 Pfam A20-like zinc finger 15 37 IPR002653 GO:0003677|GO:0008270
Stsc211868g00001 170 Gene3D - 86 166 IPR035896 -
Stsc211868g00001 170 SMART AN1_Zf_4 111 148 IPR000058 GO:0008270
Stsc211868g00001 170 MobiDBLite consensus disorder prediction 52 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211868g00001 Stsc-Chr211868 2650 4242 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211868g00001 1 170 C2H2 Transcription Factor Family AT3G52800 50.581 2.37e-51 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211868g00001 - - gmx:100789686 237.654