Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211867g00004 ATGCCTCCTCCTCCTCCTTCTCAGCTGATTGATCCTTGGAGTAATGATGAAGTTCTTTCTCTCTTGAGGATCAGATCTACCATGGAGAGTTGGTTCCCACAACTCACTTGGGAACATGTCTCAAGGAAAATGGCAGAGCTTGGATATAAGAGGAGTGCTGAGAAGTGCAAAGAGAAGTTTGAAGAAGAAAGCAGATATTTCAGCAGCAACATTAACTTCACCAACAACAAGCCCACTACTCCTCCTGCTACTACTAGTTACCGCTTTCTCAGTGAACTTGAAGAGCTTTATCATCAACAAGATAGTGATCATCATCAGCAGCGGCAAGAAGTAGTAGCAGTGGAGAAGCAACCAAGTATTGAGGAGCAGGAAGAAAAGGTTGTCATGGAGGAAGAAGATGATGATGATAAGGAGAACGAAGAGGTGGCCATGGCCGCGGTGTTGCCGGAGAAAGTTACACCAAAAACAAAGGAGAGGAAGAGGAAGAGGGGTGAGGGTGGTGGTGGTGACGGCGGCCGCCGCGATGATGAGTTTAGGTTTGAGATGTTCAAGGGTTTTTGTGAGAGCATTGTGCAGAAGATGATGGAGCAGCAAGAAGAGATGCACAACAAGCTCATAGAAGACATGGTGAGAAGAGATGAGGAGAAGCTTGCAAGGGAAGAGGCATGGAAGAAGCAAGAGGTGGAGAGAATGAACAAGGAGCTTGAGATCATGCAACAGGAACAAGCCATTGCTGGTGATAGACAAGCAAACATCATTGAGTTCTTGAAGAAATTTGCTCCAGACATTCAAAGCCTTGTTTGTGTTCAAGAAGATGGTGATGATAATAACAACAATGGAAGAAGAGACAAATTAGAGAAGGTAATAACAACAAATACTAATGTTGAACTTGAACACAATGGTTCAAATTTAAACTCAAATTCCACTGCTACTCCATTGTTGTTGCACTCCCAAAACCCTAATCCATCATCACCTTCTTCTTCTTCTGCTGTGATTCTCAATAATAACCAAAATGCTGTTATTGCTGCTGCTTCTTCTTCAACAAACCCTATAATACAAGAGACATTACAAGCTCCTTCTTCTGCTTCTAAAGATGGCAAGAGCCCTAATACCCATCTCATCAGTGATAAGGAAGCCATAAACCGTGAGAAAGATGAGATTGGAAGAAGATGGCCAAAAGATGAAGTGTTGGCACTAATAAATCTCAGGTGCAATACCCAAATGAGCAACAATAACAACAATGATGAAAACAACAACAAGGCTCTTCCATTGTGGGAGAGAATCTCATTAGGGATGCTTGAATTGGGGTACAAAAGAAGTGCAAAGAGGTGCAAAGAGAAATGGGAGAACATAAACAAGTACTTCAGAAAAACCAAGAACACCATCAAGAAGAGGTCCCTTGATTCAAGGACTTGTCCCTATTTCCATCTTCTGAGTAACCTCTATAGCCAAGGGAAGCTTGTTCTTCAACCTGAGAAGCAAGAAACTACCAATACCAATACTACTAATAATGATAACCATGGAAAAACGATGACAGATCAAACATCTTCACAAATGGGGTCTGCTGGTGGTGATGATAATGCTGGTAATTTCACCATGGAGGTTGATGATAATAATCATGGAGGTGAGAATAATAATAATAATAAATCTTTGATACAACAAGTACCTTCTTTCGATTTTGATCAGTTTTAA 1692 0.4137 MPPPPPSQLIDPWSNDEVLSLLRIRSTMESWFPQLTWEHVSRKMAELGYKRSAEKCKEKFEEESRYFSSNINFTNNKPTTPPATTSYRFLSELEELYHQQDSDHHQQRQEVVAVEKQPSIEEQEEKVVMEEEDDDDKENEEVAMAAVLPEKVTPKTKERKRKRGEGGGGDGGRRDDEFRFEMFKGFCESIVQKMMEQQEEMHNKLIEDMVRRDEEKLAREEAWKKQEVERMNKELEIMQQEQAIAGDRQANIIEFLKKFAPDIQSLVCVQEDGDDNNNNGRRDKLEKVITTNTNVELEHNGSNLNSNSTATPLLLHSQNPNPSSPSSSSAVILNNNQNAVIAAASSSTNPIIQETLQAPSSASKDGKSPNTHLISDKEAINREKDEIGRRWPKDEVLALINLRCNTQMSNNNNNDENNNKALPLWERISLGMLELGYKRSAKRCKEKWENINKYFRKTKNTIKKRSLDSRTCPYFHLLSNLYSQGKLVLQPEKQETTNTNTTNNDNHGKTMTDQTSSQMGSAGGDDNAGNFTMEVDDNNHGGENNNNNKSLIQQVPSFDFDQF 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211867g00004 563 PANTHER FI21293P1 12 546 - -
Stsc211867g00004 563 Pfam Myb/SANT-like DNA-binding domain 389 479 IPR044822 -
Stsc211867g00004 563 Pfam Myb/SANT-like DNA-binding domain 11 79 IPR044822 -
Stsc211867g00004 563 MobiDBLite consensus disorder prediction 358 381 - -
Stsc211867g00004 563 MobiDBLite consensus disorder prediction 532 563 - -
Stsc211867g00004 563 Coils Coil 120 140 - -
Stsc211867g00004 563 FunFam Trihelix transcription factor GT-2 13 69 - -
Stsc211867g00004 563 MobiDBLite consensus disorder prediction 116 176 - -
Stsc211867g00004 563 MobiDBLite consensus disorder prediction 495 563 - -
Stsc211867g00004 563 ProSiteProfiles Myb-like domain profile. 390 452 IPR001005 -
Stsc211867g00004 563 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Stsc211867g00004 563 MobiDBLite consensus disorder prediction 495 525 - -
Stsc211867g00004 563 CDD GT1 389 459 - -
Stsc211867g00004 563 MobiDBLite consensus disorder prediction 297 330 - -
Stsc211867g00004 563 MobiDBLite consensus disorder prediction 125 140 - -
Stsc211867g00004 563 Coils Coil 221 241 - -
Stsc211867g00004 563 MobiDBLite consensus disorder prediction 152 176 - -
Stsc211867g00004 563 Gene3D - 391 457 - -
Stsc211867g00004 563 Gene3D - 13 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211867g00004 Stsc-Chr211867 41270 43574 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211867g00004 12 484 Trihelix Transcription Factor Family AT5G28300 41.667 6.83e-97 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc211867g00004 Myb_DNA-bind_4 8.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211867g00004 - - ahf:112775947 662.914