Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211866g00003 ATGGGGATTCGGTTCTCCAACCTCGTGCCGTGCTGCGTAAACTCACAAGTTAAGGCATCTGTTATTGAAGTTCCACATACTGGAAATGAAGATAGAAGTGAAGCTGATAATGGGCCTGCATTTCGCGAATTTACATTCGAGCAACTCAAGAATGCGACTTCTGGTTTTGCTATTGAGAATATAGTATCTGAACATGGAGAGAAGGCTCCGAATGTTGTGTACAAAGGGAAGTTGGAGAATCAAATGAGGATTGCTGTTAAGAGGTTCAATAGGAATGCTTGGCCCGATTCCCGGCAGTTCTTGGAGGAAGCTAGATCTGTCGGCCAGCTTCGTCACCAAAGGTTGGCAAATTTGCTTGGTTGTTGTTGCGAAGGCGAAGAGAGGTTGCTTGTGGCCGAATACATGCCCAATGAAACACTCGCGAAACACCTTTTCCATTGGGAAACTCAACCGATGAAATGGCCAATGCGACTGAGAGTTGTTCTACATCTTGCAGAAGCTCTCGAATACTGCACAAGCAAAGGGCGTGCGCTCTATCATGACCTTAATGCATATAGAGTTCTATTTGACGAGGATGGTAATCCTAGGCTTTCGACTTTCGGCCTTATGAAGAATAGCAGAGATGGTAAAAGTTATAGCACAAATTTGGCATTTACCCCTCCTGAGTATCTCAGAACTGGTAGAGTAACACCAGAAAGTGTAATATATAGCTTTGGAACTCTTCTGCTTGACATTCTCAGTGGGAAGCATATCCCTCCAAGTCATGCTCTTGATTTGATTCGGGACAGAAATCTTCAGATGCTGACGGATTCTTGTTTGGAAGGAAAATTTTCTGATGATGATGGAACCGAGTTGGTGCGCTGGGCATCTCGATGTTTACAGTACGAAGCGAGAGAGCGGCCTAATCCGAAGTCATTAGTGGCTGCTTTGGCCCCTCTTCAGAAAGAGACAGAGGTTCCTTCGTATGAATTGATGGGTATCCCGCATGGTTCTACTTTAGCTTCGTTGTCTCCGCTCGGCGAAGCTTGTTCAAGAAAGGACTTGACTGCCATTCATGAAGTTTTGGAAAAACTTGGATATAAAGATGATGAGGGAGTTGCAAATGAGTTATCTTTCCAGATGTGGACTGATCAAATGCAGGACTTGCTAAATTTCAAGAAAAAAGGAGACGCAGCTTTCCGGCAGAAAGATCTTAGACTTGCAATTGAGTGCTATACACAGTTCATCGACGCCGGAACAATGGTTTCTCCGACGGTACATGCGCGGCGCAGTCTGTGCTATCTCATGAGCGAAATGTCACAGGAAGCGCTAAACGATGCGATGCAAGCGCAAGTGATATCGCCGTTGTGGCACATTGCATCTTATCTTCAGTATGTGTCATTGGATGGACTTGGAATGGAGCATGAAGCACAAGCAGCACTCAAAGATGGAACAACATTGGAAGCCAAAAGGACTGGACAAAAGTGA 1467 0.4513 MGIRFSNLVPCCVNSQVKASVIEVPHTGNEDRSEADNGPAFREFTFEQLKNATSGFAIENIVSEHGEKAPNVVYKGKLENQMRIAVKRFNRNAWPDSRQFLEEARSVGQLRHQRLANLLGCCCEGEERLLVAEYMPNETLAKHLFHWETQPMKWPMRLRVVLHLAEALEYCTSKGRALYHDLNAYRVLFDEDGNPRLSTFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDILSGKHIPPSHALDLIRDRNLQMLTDSCLEGKFSDDDGTELVRWASRCLQYEARERPNPKSLVAALAPLQKETEVPSYELMGIPHGSTLASLSPLGEACSRKDLTAIHEVLEKLGYKDDEGVANELSFQMWTDQMQDLLNFKKKGDAAFRQKDLRLAIECYTQFIDAGTMVSPTVHARRSLCYLMSEMSQEALNDAMQAQVISPLWHIASYLQYVSLDGLGMEHEAQAALKDGTTLEAKRTGQK 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211866g00003 488 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Stsc211866g00003 488 ProSiteProfiles Protein kinase domain profile. 59 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211866g00003 488 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Stsc211866g00003 488 SUPERFAMILY TPR-like 381 478 IPR011990 GO:0005515
Stsc211866g00003 488 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 24 485 IPR045845 GO:0004672|GO:0009742
Stsc211866g00003 488 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Stsc211866g00003 488 Gene3D Tetratricopeptide repeat domain 380 488 IPR011990 GO:0005515
Stsc211866g00003 488 Gene3D Phosphorylase Kinase; domain 1 30 134 - -
Stsc211866g00003 488 Pfam Protein tyrosine and serine/threonine kinase 72 309 IPR001245 GO:0004672|GO:0006468
Stsc211866g00003 488 FunFam probable serine/threonine-protein kinase At4g35230 380 488 - -
Stsc211866g00003 488 SUPERFAMILY Protein kinase-like (PK-like) 38 318 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211866g00003 Stsc-Chr211866 28833 32264 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211866g00003 10 323 Glycoside Hydrolase AT3G07070 33.237 8.70e-45 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Stsc211866g00003 PK_Tyr_Ser-Thr 1.9e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211866g00003 K14500 - gmx:100781311 870.537