Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211865g00005 AAGAAATTAGATAGTGAGCATTATATTATGGCCAATTTTGTTTTATCATCATCATCACTGTTATTATCACTATTCCTTTATCATTGTTGGATCTTTGTTGAAGCTTCCCCTCCAGGTTCTCTTGTTACCCAAATCCCTGGTTTTAATGGCAATAATTTCCCTTCCAAGCATTACTCCGGATACATAAATATTGATGGAAATGGTGAGAGTGGGAAGAACCTGTTCTACTACTTGGTTAGTTCTGAAAGAAACCCAGTGAAGGATCCACTTGTTTTGTGGCTCAATGGTGGTCCTGGCTGCTCTAGTTTTGATGGCTTTGTTTATGAGCAAGGACCATTCAAATTTGAGGCAGCAAAATCAAAAGGGAGTCTTCCAACTTTGCATACCAATCCATACAGCTGGTCTAAGGTTTCAAACATAATATATTTGGATTCTCCAGCGGGGGTTGGGCTCTCATACTCCAAGAATTCAACCAATTATGTTACTGGGGACCTACAAACCGCGTTTGATACCCATGCTTTCCTCTTAAAGTGGTTTGAACAATTTCCAGAATTTGTAGCCAATCCATTCTATATTGCTGGTGAATCTTATGCTGGAGTTTATGTGCCTACTCTAGCTTTTGAAGTAGTTAAAGGAATCCGGAGTGGTAGAAAGCCCCTCATCAACTTTAAGGGTTATATGGTGGGTAATGGTGTCACGGATGAGATTTTTGATGGAAATGCTCTCATCCCATTTGTGCATGGAATGGGCCTCATATCCGACACTATCTATGAGGATGTAGAAACTTCTTGCAAGGGAAATTTCTACAAGTATTACTCTGAGGATACTGATCAAGATGATAATGATAATTCATGCAGTAAGAGCTTTGAAAAAGTTGACAGGGCTATTGATGGGCTTAACGTGTATGATATATTGGAGCCATGTTACCATGAAGGAGATTCAAATTCACCATGGCTGAAAGCAGCAATTGCAAATGGAACATTACCAAATAGTTTTCAAGATTTAGGGGTCAATAATAATAATGAAATGCCTCTCAAAGTGAGAAAGAGAATGTTTGGCAGAGCTTGGCCTTTTAGGGCACCTCTCAAACCAGGTCTTGTTCCATCATGGCCCCAATTATTGGCTCAAACCAGACATGTTGCTTGTGTTAGCGATGTAGTTGCAACTTCATGGCTAAACAACAATGCAGTAAGGAAAGCCATTCATGCTGAGGGGGAAAGTGTGACAGGGCCATGGGAATTATGCACTGGAAAGATAGAATACAATCATGATGCTGGAAGCATGATTCCTTACCACAAGAACCTAACCACCCTTGGCTATAGGGCACTTATTTTCAGTGGAGATCATGATATGTGCGTTCCATTTACTGGAAGTGAAGCATGGACTAGTTCTCTTGCATATAAAATTCTTGATGAATGGAGACCATGGAATTCTAATGGCCAAATTGCTGGCTATTTACAAGGATATGAGAACAACCTTACCTTTCTTACAGTCAAGGGAGCTGGGCACACAGTGCCAGAGTATAAACCACGTGAAGCACTTGATTTTTACTCTCGTTGGTTGGAAGGAAAACCAATATAA 1581 0.4029 KKLDSEHYIMANFVLSSSSLLLSLFLYHCWIFVEASPPGSLVTQIPGFNGNNFPSKHYSGYINIDGNGESGKNLFYYLVSSERNPVKDPLVLWLNGGPGCSSFDGFVYEQGPFKFEAAKSKGSLPTLHTNPYSWSKVSNIIYLDSPAGVGLSYSKNSTNYVTGDLQTAFDTHAFLLKWFEQFPEFVANPFYIAGESYAGVYVPTLAFEVVKGIRSGRKPLINFKGYMVGNGVTDEIFDGNALIPFVHGMGLISDTIYEDVETSCKGNFYKYYSEDTDQDDNDNSCSKSFEKVDRAIDGLNVYDILEPCYHEGDSNSPWLKAAIANGTLPNSFQDLGVNNNNEMPLKVRKRMFGRAWPFRAPLKPGLVPSWPQLLAQTRHVACVSDVVATSWLNNNAVRKAIHAEGESVTGPWELCTGKIEYNHDAGSMIPYHKNLTTLGYRALIFSGDHDMCVPFTGSEAWTSSLAYKILDEWRPWNSNGQIAGYLQGYENNLTFLTVKGAGHTVPEYKPREALDFYSRWLEGKPI 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211865g00005 526 Gene3D alpha/beta hydrolase 35 342 IPR029058 -
Stsc211865g00005 526 FunFam Carboxypeptidase 428 523 - -
Stsc211865g00005 526 PRINTS Carboxypeptidase C serine protease (S10) family signature 493 506 IPR001563 GO:0004185|GO:0006508
Stsc211865g00005 526 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 142 IPR001563 GO:0004185|GO:0006508
Stsc211865g00005 526 PRINTS Carboxypeptidase C serine protease (S10) family signature 143 153 IPR001563 GO:0004185|GO:0006508
Stsc211865g00005 526 PRINTS Carboxypeptidase C serine protease (S10) family signature 178 203 IPR001563 GO:0004185|GO:0006508
Stsc211865g00005 526 Pfam Serine carboxypeptidase 46 523 IPR001563 GO:0004185|GO:0006508
Stsc211865g00005 526 ProSitePatterns Serine carboxypeptidases, serine active site. 192 199 IPR018202 GO:0004185
Stsc211865g00005 526 SUPERFAMILY alpha/beta-Hydrolases 48 525 IPR029058 -
Stsc211865g00005 526 Gene3D - 379 526 - -
Stsc211865g00005 526 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 43 510 IPR001563 GO:0004185|GO:0006508
Stsc211865g00005 526 FunFam Carboxypeptidase 381 525 - -
Stsc211865g00005 526 FunFam Carboxypeptidase 35 335 - -
Stsc211865g00005 526 ProSitePatterns Serine carboxypeptidases, histidine active site. 493 510 IPR033124 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211865g00005 Stsc-Chr211865 37311 42996 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211865g00005 387 526 Calmodulin-binding Proteins AT2G22960 49.286 8.59e-42 146