Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211864g00004 ATGGCTCTGCAACTCCAATCTTCCTTCTCCTCCTCTTCCACCCATTCTACTTGTTCTTCTTCTTCCTCCTCTTTCAACCATGCCTACAAATACGACGTGTTTATTAGTTTCAGAGGCAAAGATACTCGCTATGGTTTTACCGGCTATCTTTATGAAGCTCTTTCTAATAAAGGAATCCATGCTTTCATTGATGACGAGGAGCTTCAACAAGGGGAAGAAATCACACCTTCACTTCTCGGCTCAATTCAAGACTCTTGGATTGCCATCATTGTTCTTTCTCCTAACTATGCTTCCTCTTCTTTTTGCTTGGATGAGCTTGTCCATATCCTTCACTGCATCAAGGGAAATAATCGCTTTGTTTTGCCGGTTTTCTATAACGTTGATCCTTCTGATGTTCGCCATCTTAAAAAGAGTTTCGGAGAGGCGATGGCTAAGCATGAGGGGAGATTCAAGAATGACATGAACAAGGTGCTCAAATGGAAGAAGGCTCTGCATCAAGTAGCTAATTTGTCTGGCTATCATTTCAAACATGGTGATGGATATGAACATAAGTTTATTAGAAATATTGTGGAAAACATTTCAAGAAAGGTTAGGTTTGTACCTTTGCATGTTGCTGATTACCCTGTTGGACTAGAATCTCGGGTGCCGGAAGTAATTTCCCTTTTGGAAATGGATTCTAGTGATCGAGTTCACATGGTAGGGATACATGGAATTGGTGGCATAGGAAAAACAACACTTGCTCTTGCTGTTTATAACCTGATTGCTAACAATTTTAAAGGTGTGTGCTTTCTTGAAGATGTCAGAGAAAATTCAAATAAATATGGAAGGAACCTCACTGATACAACAAAGGCTTCGTCGAAAAAGGTTCTTTTGGTTCTGGATGACATTGATGATCGCAGGCAGCTACAGGCTGTTGCTGGAAAACTTGAATGGTTTGGTCCCGGCAGCAGAGTTATTATTACAACACGTGACACACATTTGCTAAAATGTCATGGTGTTCGAGATACATATGAGGTACACGATTTAAACAAGGATGACTCTTTTCAATTGCTTATTAAAAAAGCTTTTGAAAATAACAATGTTAGCCCGAGTTACACAGATGTTTTAAATCGTGCAATAGCTTATGCCTCAGGACATCCATTGGCTTTGGAATTAATAGGCTCCAACTTGTTTGGAAAAGAAGTACAAGTTTGGGAATCTGCATTGGATCATTTTGAAAAACATCTCGATAATAAAATGCATCAGATACTTCGACTAAGTTTTGATGCTTTGGGAAAAGAAGAGCAAAGTGTTTTCCTAGATATTGCTTGTTGTTTTAAAGGATATTCATTAGTGGAAGTTACAGATCTACTTCAAGCTCATTATGGGCGTTGCATGAAATATCATCTTGGAGTGTTGGTTGAAAAATCTCTCATAAAGACTAATAAGGTGAATGGAATAGTGACAATGCATGATTTGATAGAAGACTTGGGCAAAGAAATTGTTTTTGAAAAATCACCAGCAATGCCTGGGAAACGTAGTAGATTATGGTTCTATGAAGATATAGTTAAGGTTTTAGAAGATAATCAATTGGGGAGCTTGAAAGTTTTGGAATTGGAGATCTGTGATTCTTTGAAAGAAATACCTGATGTATCTAATCTTCAAAATTTAGAAGAACTTTGGTTCAGAAGATGTAGCAATCTAGTTAGAATTCACCCTTCAGTTGGTTTTTTAAATAAACTTAAAATATTGAAGGCTACATATTGCAAAAAGCTGAGGAGTTTTCCACCTGCTATCAAATTGCCCTCACTGGAACAGCTCATTCTACAAGGTTGCTCAAGCCTCAAGTATTTTCCAGAAATTCTGGAAGAGATGGAAAATGTAAAAGTGCTCGATTTGAATTACACTGGCATAAAAGATTTGCCATGTTCATTTCGTAATCTTTCTGGACTGGGGCGTTTGGAAATGATAGGGGATGAAATGTGTAAGATACCAAGTGTCGTTACCATGATGCCACAACTGTGTGAGTGTAGGATTGACGGAGGAGGCAATAGCAGCCGGGAACGATCATTGCAGATGGAGATGGTTCTAGAAAAGCTAATTCACTGCATCCCCTCTTCAGATTGGATAAATTGTTGTTTCCAAAACATTAATTTGTTAGATGACTTTTTTCCACTAGCTGTTGCATGGTTTCCCAATGTGTCATCTTTAAACTTAAGTGGCAATAATTTCACAGTCCTTCCTGAATGCATCCAACAATTTCACCTTCTAAGGGAACTCATAGTGGATGATTGCAAGCATCTTCGGGAGATTAGAGGAATTCCACAAAAATTGGAACGCTTCTCAGCAATAAACTGCAAATCTTTGAGTCCGTGGGGCACAAGCGTGTTACTCAATCAGGAAGTGCATGAGGGTAGAAGTACTCGCTTTGTGATGGCAGGTGGAACCATTCCATGGTGGTTTGAGCGACGCTTTAGGGGTGCTTCTATTTCTTTATGGATTCGTGGCACCGAATTTCCTAACAATGCTCTTTGTGTTGCCATTCTGCTCAATATCTCTGTTCCAATTGAAGTAAGTCTCACCGTGGCAATCAATGGCAACCAAGTTTGGTATGGAGAGCAGGCTAAAATGAATCAATTATTTATTTTTAATCTGAATTTACAACGGTATCATCACATGCTAACTTTGCAAAAAGGATGGAATCACACGGAGCTTTCATGTACAGCACGTTACAATAACAGCATGGAGGTCTCAAGTATTGAGTTTATTGTAAAAGAGATTCGAATGCATGTATGGAAGCAAAAGATCAGTAGCAGTATAATTCAAGATATCCGATTCACTGATCCTTACAAAATGAGAGAACTAATTATAATGATGATGATGCTCTCAATGGTATTGCCCAACCACAAGAGGCAGCCCTTGCACATGGAAACATGCATTGGTTTGTGGACATTACTCTTTCTCTCTCACACTTTTTTTGAATAA 2964 0.387 MALQLQSSFSSSSTHSTCSSSSSSFNHAYKYDVFISFRGKDTRYGFTGYLYEALSNKGIHAFIDDEELQQGEEITPSLLGSIQDSWIAIIVLSPNYASSSFCLDELVHILHCIKGNNRFVLPVFYNVDPSDVRHLKKSFGEAMAKHEGRFKNDMNKVLKWKKALHQVANLSGYHFKHGDGYEHKFIRNIVENISRKVRFVPLHVADYPVGLESRVPEVISLLEMDSSDRVHMVGIHGIGGIGKTTLALAVYNLIANNFKGVCFLEDVRENSNKYGRNLTDTTKASSKKVLLVLDDIDDRRQLQAVAGKLEWFGPGSRVIITTRDTHLLKCHGVRDTYEVHDLNKDDSFQLLIKKAFENNNVSPSYTDVLNRAIAYASGHPLALELIGSNLFGKEVQVWESALDHFEKHLDNKMHQILRLSFDALGKEEQSVFLDIACCFKGYSLVEVTDLLQAHYGRCMKYHLGVLVEKSLIKTNKVNGIVTMHDLIEDLGKEIVFEKSPAMPGKRSRLWFYEDIVKVLEDNQLGSLKVLELEICDSLKEIPDVSNLQNLEELWFRRCSNLVRIHPSVGFLNKLKILKATYCKKLRSFPPAIKLPSLEQLILQGCSSLKYFPEILEEMENVKVLDLNYTGIKDLPCSFRNLSGLGRLEMIGDEMCKIPSVVTMMPQLCECRIDGGGNSSRERSLQMEMVLEKLIHCIPSSDWINCCFQNINLLDDFFPLAVAWFPNVSSLNLSGNNFTVLPECIQQFHLLRELIVDDCKHLREIRGIPQKLERFSAINCKSLSPWGTSVLLNQEVHEGRSTRFVMAGGTIPWWFERRFRGASISLWIRGTEFPNNALCVAILLNISVPIEVSLTVAINGNQVWYGEQAKMNQLFIFNLNLQRYHHMLTLQKGWNHTELSCTARYNNSMEVSSIEFIVKEIRMHVWKQKISSSIIQDIRFTDPYKMRELIIMMMMLSMVLPNHKRQPLHMETCIGLWTLLFLSHTFFE 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211864g00004 987 Gene3D - 280 334 IPR027417 -
Stsc211864g00004 987 Gene3D - 196 279 IPR027417 -
Stsc211864g00004 987 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 31 519 IPR044974 GO:0006952
Stsc211864g00004 987 SUPERFAMILY Toll/Interleukin receptor TIR domain 20 173 IPR035897 -
Stsc211864g00004 987 Pfam NB-ARC domain 286 411 IPR002182 GO:0043531
Stsc211864g00004 987 SMART till_3 30 170 IPR000157 GO:0007165
Stsc211864g00004 987 FunFam Disease resistance protein (TIR-NBS-LRR class) 27 199 - -
Stsc211864g00004 987 Gene3D - 27 195 IPR035897 -
Stsc211864g00004 987 MobiDBLite consensus disorder prediction 1 24 - -
Stsc211864g00004 987 Gene3D - 341 425 IPR042197 -
Stsc211864g00004 987 SUPERFAMILY L domain-like 483 770 - -
Stsc211864g00004 987 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 435 IPR027417 -
Stsc211864g00004 987 ProSiteProfiles TIR domain profile. 29 197 IPR000157 GO:0007165
Stsc211864g00004 987 Gene3D Ribonuclease Inhibitor 475 788 IPR032675 -
Stsc211864g00004 987 PRINTS Disease resistance protein signature 232 247 - -
Stsc211864g00004 987 PRINTS Disease resistance protein signature 376 390 - -
Stsc211864g00004 987 PRINTS Disease resistance protein signature 522 538 - -
Stsc211864g00004 987 Pfam TIR domain 30 197 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211864g00004 Stsc-Chr211864 27466 31213 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211864g00004 533 658 WRKY Transcription Factor Family AT5G45050 32.090 3.74e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211864g00004 - - aip:110272157 852.432