Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211863g00006 ATGGACACTGCGAATCAGCAGACGCTGAAAGCAAGAACCTTTGATGATGATGATGATGAAACCCAACAGCACCAACAACAACAACAACAAACTGTGCTTGTTCCCATGCAGGTGAATGGCGTGTTGAACCCTTTTGATGGAGGTTCTCACGAGGTGGAAGAACCTTTCGTGACTTCTGGGTTGTCTTCTACTGCTACTCCCGTTCAGCCAAGAACCAGTGAGCTCACCATTGCATTTGAAGGCGAGGTTTATGTTTTCCCAGCGGTTACACCAGAAAAGGTGCAGGCTGTATTGTTACTCTTGGGAGCCCAAGAGATCCCCAGGACTGCTGCCAGCTCCGATTCTTCGTTGCAGCAGAACAGTCCACAGATTATGGGAATAAATGAGGCTTCGCGAGGTTCAAAGGATTCGCGGAGAATTGAATCACTTGTAAGGTTCCGTGAAAAGCGAAAAGACCGATGTTTTGAGAAAAAAATCCGGTACACTTGCCGTAAAGAGGTAGCCGAGAGGATGCATCGTAAGAATGGACAGTTTACATCACTGAAGGAAGGCTACAAATCTCCTGTTGAAAATTTCGAATCAAGCAATGGTGGAGGCGATCCTTATTCAGAGTCAATTGAACGTAGATGTCAGCACTGTGGAATTAGTGAAAAGTCAACTCCAGCTATGCGTCGAGGACCATCCGGTCCAAGATCTCTGTGCAACGCCTGTGGTCTTATGTGGGCTAATAAGGGAACTCTGAGAGATCTTAGCAAAGCAGCAAGGGTCACTTTTGAACAAAATGGACAGGATACTTCAACTGATATAAAACCTTCGCCAACGGAACCAGAGAACTCTTTTCCCGACCAGAACGAAGATATCTGCCCAGAGGAAGCTAAACCCATGCCAATAGATTCCAGACAGTCATCCGAGAGGAACAATGATCAGTGTACACTTGATACTGTGGAAGCAGTTACCAACGATGTATCCATCCAAATGGAGAATAATGCTCTCAGTATACATCAAGAGGATAATAATCTTGAAGATTTTGCGGATGCTTCGGGAACAGAATTTGATATTCCTGCCTGTTTTGATGAGCAGGTTGATATTGACATTGATGATTCCAATATGAGGACTTACTGGCTATGA 1128 0.4504 MDTANQQTLKARTFDDDDDETQQHQQQQQQTVLVPMQVNGVLNPFDGGSHEVEEPFVTSGLSSTATPVQPRTSELTIAFEGEVYVFPAVTPEKVQAVLLLLGAQEIPRTAASSDSSLQQNSPQIMGINEASRGSKDSRRIESLVRFREKRKDRCFEKKIRYTCRKEVAERMHRKNGQFTSLKEGYKSPVENFESSNGGGDPYSESIERRCQHCGISEKSTPAMRRGPSGPRSLCNACGLMWANKGTLRDLSKAARVTFEQNGQDTSTDIKPSPTEPENSFPDQNEDICPEEAKPMPIDSRQSSERNNDQCTLDTVEAVTNDVSIQMENNALSIHQEDNNLEDFADASGTEFDIPACFDEQVDIDIDDSNMRTYWL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211863g00006 375 SMART GATA_3 204 257 IPR000679 GO:0006355|GO:0043565
Stsc211863g00006 375 Pfam GATA zinc finger 210 246 IPR000679 GO:0006355|GO:0043565
Stsc211863g00006 375 ProSiteProfiles Tify domain profile. 68 103 IPR010399 -
Stsc211863g00006 375 Pfam tify domain 70 102 IPR010399 -
Stsc211863g00006 375 ProSiteProfiles CCT domain profile. 139 181 IPR010402 GO:0005515
Stsc211863g00006 375 MobiDBLite consensus disorder prediction 259 308 - -
Stsc211863g00006 375 Gene3D - 203 264 IPR013088 GO:0006355|GO:0008270
Stsc211863g00006 375 MobiDBLite consensus disorder prediction 259 281 - -
Stsc211863g00006 375 MobiDBLite consensus disorder prediction 1 34 - -
Stsc211863g00006 375 ProSitePatterns GATA-type zinc finger domain. 210 237 IPR000679 GO:0006355|GO:0043565
Stsc211863g00006 375 PANTHER GATA TRANSCRIPTION FACTOR 28 11 352 IPR045280 GO:0006355
Stsc211863g00006 375 Pfam CCT motif 139 180 IPR010402 GO:0005515
Stsc211863g00006 375 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 206 257 - -
Stsc211863g00006 375 CDD ZnF_GATA 209 252 IPR000679 GO:0006355|GO:0043565
Stsc211863g00006 375 SMART tify_2 68 103 IPR010399 -
Stsc211863g00006 375 ProSiteProfiles GATA-type zinc finger domain profile. 204 260 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211863g00006 Stsc-Chr211863 14874 18680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211863g00006 74 254 Tify Gene Family AT1G51600 53.646 6.21e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc211863g00006 CCT 5.5e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211863g00006 - - adu:107468732 657.907