Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211860g00006 ATGGCGTCGGCAGCGGCGTCACGTCGGCTTCGGAATCTGCAGTCGCAACCGGAAAACAAGATCTGCGTGGACTGCTCCCAGAAGAATCCGCAGTGGGCCTCCGTCTCTTACGGCGTCTTCATGTGCCTCGAGTGCTCCGGCAAGCACCGCGGCCTCGGAGTCCACATCTCCTTCGTCCGATCCGTTACCATGGACGCATGGTCCGAAATCCAGCTCAAGAAAATGGAAGCTGGCGGCAACAATAACCTCAACTCCTTTCTCACATCTTACTCTGTTCCCAAGGAAACTGATATAGTTAAGAAGTACAACACGAAAGCCGCCGCTATCTACCGTGATCGCATCGCCGCAATTGCTGAAGGGCGGCCATGGCGCGATCCGCCTGTTCATAGGGAGGATCTCGCCGGAGGATTCGCTGCTGGAAAGGGGAAGCCGCCGATGAACGGCAGTAATGGCGGAAGCAAGCGGAATGACGGCGATTGGGACGATTGGGGAACTGACGACAGTTTTGGCGGGGATTTGCGGCGGAATCAGTCTGCTGGCGATGTGAGAAGTGTTGGCTATGGTGCTGGCGGTGGTGGTGTGGCGGGGAGGTCTAGGTCGACGGAGGATATTTACACGCGGTTGCAGCTTGAGGCTTCGGCGGCGAACACGGAGAGCTTCTTTTCGAGGAAGATGGCGGAGAATGAGTCGCGGCCGGAGGGGCTACCGCCGTCGAAGGGAGGGAAGGACGTCGGTTTTGGATCAAGTCCTGCACCGACGGCGTCGCAGAGAAGCAATCAGCAAAACGACTATTTCTCTGTCGTTTCGCAGGGGATTGGTAAATTATCGTTGGCGGCTCAGACTGCTGCTTCTAAGGTCAAGGAAGGTGGTTATGATAAAAAAGTCAATGATGTCACTCAGAAGACATGGGGTATAATGAAAGGGGTCATGGCTATGGCTTCAGAGAAGGTAGATGAGTACACCAGAGATAGCTCAAATGGGATGAATAATAATTGGCAACAAATTGAAAATGGCAGAAATGGTTACCATCAGGATTTCAATCAACAGAACAAGGGATGGAATTCTTCTACCAGAACAGAACAATCTTCTTCTAAGCATTTTAACACCTACAGCTCAAGTTCTTGGGATGATTGGGACAATAGAGGTAGTAGGAACGGAAAACCGGCTAATGGAGCAACTCACAATTCAAGCTCTTGGGATGACTGGGGCCACAAAGGCTCCAGGATGGAAGAGCCAGCGAAAGGATCGGCAGCTAATAACGACGACGGATGGGCTGGCTGGGATGATGACAAAGATGATGGATTTGATGATTCTTATTATGAAAGTGGATCTAAAACTAAGAAAGGTGTTACTAACTATGGGAAATCCGATGGTGGCTGGACAGGGGCAGGCTTTGCCTAA 1401 0.5175 MASAAASRRLRNLQSQPENKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDAWSEIQLKKMEAGGNNNLNSFLTSYSVPKETDIVKKYNTKAAAIYRDRIAAIAEGRPWRDPPVHREDLAGGFAAGKGKPPMNGSNGGSKRNDGDWDDWGTDDSFGGDLRRNQSAGDVRSVGYGAGGGGVAGRSRSTEDIYTRLQLEASAANTESFFSRKMAENESRPEGLPPSKGGKDVGFGSSPAPTASQRSNQQNDYFSVVSQGIGKLSLAAQTAASKVKEGGYDKKVNDVTQKTWGIMKGVMAMASEKVDEYTRDSSNGMNNNWQQIENGRNGYHQDFNQQNKGWNSSTRTEQSSSKHFNTYSSSSWDDWDNRGSRNGKPANGATHNSSSWDDWGHKGSRMEEPAKGSAANNDDGWAGWDDDKDDGFDDSYYESGSKTKKGVTNYGKSDGGWTGAGFA 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211860g00006 466 PRINTS HIV Rev interacting protein signature 38 55 IPR001164 GO:0005096
Stsc211860g00006 466 PRINTS HIV Rev interacting protein signature 19 38 IPR001164 GO:0005096
Stsc211860g00006 466 PRINTS HIV Rev interacting protein signature 59 80 IPR001164 GO:0005096
Stsc211860g00006 466 MobiDBLite consensus disorder prediction 123 199 - -
Stsc211860g00006 466 FunFam ADP-ribosylation factor GTPase-activating protein 1 132 - -
Stsc211860g00006 466 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 3 389 IPR044519 GO:0005096|GO:0016192
Stsc211860g00006 466 SMART arf_gap_3 4 123 IPR001164 GO:0005096
Stsc211860g00006 466 CDD ArfGap_ArfGap1 6 120 - -
Stsc211860g00006 466 MobiDBLite consensus disorder prediction 221 260 - -
Stsc211860g00006 466 MobiDBLite consensus disorder prediction 320 466 - -
Stsc211860g00006 466 SUPERFAMILY ArfGap/RecO-like zinc finger 8 115 IPR037278 -
Stsc211860g00006 466 ProSiteProfiles ARF GTPase-activating proteins domain profile. 7 123 IPR001164 GO:0005096
Stsc211860g00006 466 Pfam Putative GTPase activating protein for Arf 8 105 IPR001164 GO:0005096
Stsc211860g00006 466 Gene3D Arf GTPase activating protein 1 126 IPR038508 -
Stsc211860g00006 466 MobiDBLite consensus disorder prediction 386 400 - -
Stsc211860g00006 466 MobiDBLite consensus disorder prediction 323 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211860g00006 Stsc-Chr211860 23648 26394 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211860g00006 8 90 C2H2 Transcription Factor Family AT4G05330 50.000 5.49e-23 97.8