Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211859g00004 ATGGGGACTGGGGAAGAAAGCACAGCTAAACCTTCTAAACCATCTTCTGCTACTCAGGAGATTGCACCGGCTCCTTCTTATCCTGATTGGTCAAGCTCCATGCAGGCTTATTATGCCCCTGGAGCCACTCCACCTCCTTTTTACGCCTCAACTGTTGCTTCTGCAGCTCCCCATCCCTATCTGTGGGGAGGCCAGCATCCTCTAATTCCACCATATGGTACTCCTGTTCCATATCCAGCTATATATCCTCCTGGGAGTACTCCGAGTGCCACACAGACAGAGTTTGTAGGCAAGGGACCCAACGGAAAAGATCGGACTTCTGCTAAAAATTCGAAGGGAACTTCTGCCAATAATGGTTCTAAAGCTGGAGACAATGGAAAAGCAGGTTCAGGGTCAGGAAATGATGGCATCTCACAAAGTGGTGAAAGCGGTTCTGAGGGATCATCCGATGACAGTGATGAGAAGGAATCCGCCGCAAACAAGAAAGGAAGCTTTGACAAAATGCTTGCTGATGGAGCCAATGCACAGAACAATGCCGTTACTCAATCTTCTGGAAAGGCTGCTGGGTCAATGGCTGCAACTAATCTTAATATTGGAATGGACTTGTGGAATGCATCTTCTGCGGGTGCTGATGCTACAAAACTGAGAAACAATCAACCCGCCGCCCCAGGAGCCGTCACCCCTCCCACAATAATGGGACGTGAAGTTGCACTTGGTGAACAGTGGATACAAGACGAGCGCGAACTGAAGAGACAGAAAAGGAAACAGTCTAACAGAGAGTCAGCTAGGAGGTCAAGACTACGCAAGCAGGCTGAGTGTGAAGAGTTGCAAAAGAAGGTGGAGTCACTGGGAAACGAGAACCGAACTCTGAGAGAAGAGCTTCAGAGAGTATCAGAAGAATGCGAGAAGCTTACAGCTGAAAATAATTCCATCAAGGAAGAGTTGGAGAGGTTATGTGGACCAGAGGCAGTTGCCAGCCTTGAATAA 987 0.4843 MGTGEESTAKPSKPSSATQEIAPAPSYPDWSSSMQAYYAPGATPPPFYASTVASAAPHPYLWGGQHPLIPPYGTPVPYPAIYPPGSTPSATQTEFVGKGPNGKDRTSAKNSKGTSANNGSKAGDNGKAGSGSGNDGISQSGESGSEGSSDDSDEKESAANKKGSFDKMLADGANAQNNAVTQSSGKAAGSMAATNLNIGMDLWNASSAGADATKLRNNQPAAPGAVTPPTIMGREVALGEQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQKKVESLGNENRTLREELQRVSEECEKLTAENNSIKEELERLCGPEAVASLE 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211859g00004 328 MobiDBLite consensus disorder prediction 58 188 - -
Stsc211859g00004 328 Coils Coil 259 314 - -
Stsc211859g00004 328 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 324 IPR044827 GO:0003700|GO:0006355|GO:0043565
Stsc211859g00004 328 MobiDBLite consensus disorder prediction 174 188 - -
Stsc211859g00004 328 Pfam bZIP transcription factor 246 308 IPR004827 GO:0003700|GO:0006355
Stsc211859g00004 328 MobiDBLite consensus disorder prediction 104 146 - -
Stsc211859g00004 328 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 248 311 IPR004827 GO:0003700|GO:0006355
Stsc211859g00004 328 PRINTS cAMP response element binding (CREB) protein signature 245 261 - -
Stsc211859g00004 328 PRINTS cAMP response element binding (CREB) protein signature 283 300 - -
Stsc211859g00004 328 PRINTS cAMP response element binding (CREB) protein signature 263 283 - -
Stsc211859g00004 328 PRINTS cAMP response element binding (CREB) protein signature 149 171 - -
Stsc211859g00004 328 MobiDBLite consensus disorder prediction 70 84 - -
Stsc211859g00004 328 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 253 268 IPR004827 GO:0003700|GO:0006355
Stsc211859g00004 328 MobiDBLite consensus disorder prediction 148 162 - -
Stsc211859g00004 328 Pfam G-box binding protein MFMR 2 86 IPR012900 -
Stsc211859g00004 328 CDD bZIP_plant_GBF1 251 301 IPR045314 GO:0003700|GO:0006355
Stsc211859g00004 328 MobiDBLite consensus disorder prediction 1 38 - -
Stsc211859g00004 328 Gene3D - 249 303 - -
Stsc211859g00004 328 FunFam BZIP transcription factor 248 299 - -
Stsc211859g00004 328 MobiDBLite consensus disorder prediction 248 272 - -
Stsc211859g00004 328 SUPERFAMILY Leucine zipper domain 249 305 IPR046347 GO:0003700|GO:0006355
Stsc211859g00004 328 SMART brlzneu 246 310 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211859g00004 Stsc-Chr211859 31103 33233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211859g00004 1 328 bZIP Transcription Factor Family AT4G36730 50.150 3.96e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc211859g00004 MFMR 5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211859g00004 K09060 - gmx:547788 467.233