Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211859g00003 ATGAATCATCGAGCTATGGATGAACACATGATGCTCATATCTCAGCTATACCCTGCTGCTGCTGGTGGTAGTGGTGCATCATACACTACTCATCAAATAGTTTCTCAACAAGGTGAGAACAAGAAAGCAAGAAGGAGGCGTAACAAGAAGAAGAAAGGAGGAGAGAACGGAGAAGGAGGGAACAAGAAGAGGAAGCTGAGTGAGGAGCAGGTGAATCTTCTTGAGATGAACTTTGGAAATGAACACAAGCTTGAGTCAGAACGGAAGGACAAGCTTGCTTTGGAGCTTGGTTTGGATCCGAGGCAAGTAGCCGTGTGGTTTCAGAACAGAAGAGCTCGCTGGAAGAACAAGAAACTCGAGGAAGAGTACTCCAATCTCAAAAGAGCACATGAAACCACTTTAATCGATAAATGCCGCCTTGAAACTGAGGTGTTGAAGCTTAAGGAACAACTGTGTGAGGCAAAAGAGGAGATTCAGCGATTACAAGAGAACAGAGTCCCAAGCAACAGTACCAGTTCAAGCCAATCGCAATCACAATCACAATCACAGTCAATGGAAATGATGGACCCACCATTTTTTGGAGACTTTGGAGTGGAACCATATGAGTATGACGATTATGTGTTCTATGTTCCTGAGACTCATTACACTAATGGCATGGAGTGGGTTAATAATTTGTACATGTAG 684 0.4371 MNHRAMDEHMMLISQLYPAAAGGSGASYTTHQIVSQQGENKKARRRRNKKKKGGENGEGGNKKRKLSEEQVNLLEMNFGNEHKLESERKDKLALELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKRAHETTLIDKCRLETEVLKLKEQLCEAKEEIQRLQENRVPSNSTSSSQSQSQSQSQSMEMMDPPFFGDFGVEPYEYDDYVFYVPETHYTNGMEWVNNLYM 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211859g00003 227 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Stsc211859g00003 227 FunFam homeobox-leucine zipper protein ATHB-40 56 125 - -
Stsc211859g00003 227 CDD homeodomain 64 118 IPR001356 GO:0003677
Stsc211859g00003 227 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
Stsc211859g00003 227 MobiDBLite consensus disorder prediction 52 67 - -
Stsc211859g00003 227 Coils Coil 144 164 - -
Stsc211859g00003 227 Pfam Homeodomain 62 116 IPR001356 GO:0003677
Stsc211859g00003 227 MobiDBLite consensus disorder prediction 162 186 - -
Stsc211859g00003 227 SMART HOX_1 60 121 IPR001356 GO:0003677
Stsc211859g00003 227 Gene3D - 54 125 - -
Stsc211859g00003 227 PRINTS Lambda-repressor HTH signature 97 113 IPR000047 GO:0003677
Stsc211859g00003 227 PRINTS Lambda-repressor HTH signature 88 97 IPR000047 GO:0003677
Stsc211859g00003 227 MobiDBLite consensus disorder prediction 163 186 - -
Stsc211859g00003 227 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 37 179 IPR045224 GO:0003700
Stsc211859g00003 227 MobiDBLite consensus disorder prediction 33 67 - -
Stsc211859g00003 227 Coils Coil 109 136 - -
Stsc211859g00003 227 SUPERFAMILY Homeodomain-like 60 125 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211859g00003 Stsc-Chr211859 23128 25091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211859g00003 1 227 Homeobox Transcription Factor Family AT4G36740 53.879 1.24e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Stsc211859g00003 Homeodomain 2.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211859g00003 K09338 - gmx:100809616 268.855