Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211856g00010 ATGATGGTTCTGGATGCATTGAATTCTGGCCCTACTTCAGAAGCCATTTCTCAAATTATAGAAACCATCGCTGATTTTCTATATTATGCTAGTGATGTTCTTGTGAAGAAGGATAGTTTTAAGGAACTTTCAGCTTACTTGGAAAGAATTTCACCCATTTTAAAAGCATTGAAGAAAGGAAAAGTCAGAGATTCTGAGAGATTCAACCATGCCATTGAGATTCTGAGTCGTGAAGTTAGAGATGCCAAGCAACTGGCTGAAGAATGCAGCAAGAAGAACAAGGTATATCTCCTACTGAACTGCAGAACCATTATCAAGCGCATCCAAAATAGCACTAGTGAGATTAGCAGGGCAATTGGTCTTCTTCCTTTGGCCACACAAGGTCTTTCCAATGGAATAGTTGAAGAAATTGTAAAGCTATGTGAGAATATGCAGGCTGCTGAGTTTAAGGCAGCCATAGCAGAAGAAGAGATTTTAGAGAAAATTGAGTCTGGGATACAGGAAAAGAATGTTGATCGCTCCTATGCAAATGATTTGTTGGTTCTCATTGCAGATGCTGTTGGGATTACAAATGAGAAATCAACAATGAAGAAGGAACTTGAAGAGTTTAAGAGTGAAATCGAAAATGCCAGGCTAAGGAAGGACTTAGCTGAAGCCATACAAATGGATCAGATCATTGCTTTGTTGGAAAGAGCTGATGCAGCTTCATCACCTAGGCAAAAAGAACTCAAGTACTTTAACAAACGCAGATCTTTGGGAAGTCAACCCTTGGAACCATTACAGTCCTTTTATTGCCCCATTACCCGGGATGTCATGGTTGATCCTGTTGAAACTTCATCAGGTCAAACATTTGAGAGGAGTGCAATTGAGAAGTGGTTTGCTGATGGCAATGAATTGTGTCCTCTAACTATGGTTCCTTTAGACACATCAGTTTTGAGACCCAACAAAACCTTGAAACAATCAATAGAAGAATGGAAAGACAGAAATACAATGATTACAATTGCTTCAGTGAAAGAAAAAATTCAATCAGGAGATGGTGAGGAAGTACTGCATTGTTTAGAGAAGCTTCAAGACTTGTGTGAACAAAAGGGCCAGCACAGAGAATGGGTGTTACTGGAGAATTACATTCCAGTACTTATCCGATTACTCAATGCTAAAAACCGTGATGTCAGGAGTAATGCCCTTGTTATCCTTTGCATGCTGGCAAAGGATAGCGAAGATGCCAAGGAAAGAATTGCAAACGTTGATAATGCAATTGAGTCTATTGTGCATTCTCTTGGTCGTCGTTTGGGGGAAAGGAAATTAGCAGTGGCATTACTTCTAGAACTATCCAAATATGATTTACTAAAAGAACGCATTGGAAAAGTTCAAGGTTGCATACTGTTATTGGTGACTATGTCCAGCAGTGATGACCATCAATCTGCCAGAGATGCAACAGAGCTGTTGGAAAACCTTTCATATTCTGACCACAATGTGATACAGATGGCAAAGGCCAATTATTTCAAGCAGTTACTGCAGCGTCTCTCCACAGGGTCAGACGAGGTGAAGATGATGATGGCCACAACTTTAGCAGAAATGGAGCTAACTGACCATAATAAGGAGTCCTTGTTTGAAAGTGGTATACTTGCTCCTCTTCTTGACTTGGTCTCACATAATGATGTTCAGGTGAAAATAGTGGCCCTTAAAGCTCTTAAGAATCTATCCAGTTTAAAGAAAAATGGACTGGAAATGATTCGACAAGGTGCAGCACGCCCGTTACTTAACATTCTTTTCCAGCACAGCATTCCATCTTTGAGTTTGTGGGAACATGTAGCACCGATAACTATGCAGCTCGCTGCATCGACGATGTCACAAGATGCACAGACACCAGTTTCACTGCTAGAATATGATGAGGATGTTTTTAACCTTTTCTCTCTAATTACTTATAAGATGCCTGATGTGCGGCAATACACTATCCAGACATTTTATGCCTTGTGCCAATCGCCCTCAGCTTCTTATATTAGGAGCAAGCTAAGAGAGTGCACAGCTGTCCAAGTACTGGTGAAGTTGTTTGAGACTGAAAACCAAAAACTACGAGGAAGTGCAGTAAAGCTTTTTTCTTGCCTTGTAGAAGGTTGTGATGAAGCCATCATAGTAGCGAATGTGAACGAGAAGTGCATTGAGACTTTGATCAGAATCCTGAAATCGTCTTCTGATGAAGAAGAAATAGTTTCTACTTTGGGAATAATTTCCAGTTTGCCAGAAAATCACCAGATCACTCAGTGGCTTTTAGATGCTGGTGCCCTGATGATTATTTATGACTATATCCAAGAAGGGAAGAACAAAGATCTTCAAAGAAGCAAGCTGGTAGAGAATTCTGTTAGTGCCTTATGTCGTTTTACAGTGCAAACATACCCGGATTGGCAAAGGAAAGTAGCAGAAATTGGGATTATAACTGTTCTAGTGCAGTTGCTTGAAAGTGGAAGCATGTTAACAAAACAACGAGCAGCGTTGTGTCTTGCTCAGTTTTCTAGAAGTTCACCGGGGCTGAGCAGGCCATTGCCGAAGCGCAAGGGACTGTGGTGCTTCTCACCCTCAGCGGGTGAAAGTGGATGCTTAGTTCATGGGGGCCTGTGCACTGTGAAAACCTCATTTTGCCTTTTGGAGGCTGATGCAGTAGTACCGCTAGCAAATGTTCTTGAGGAATCTGATCCTGGAGCTTGTGAAGCTTCTTTGGATGCTCTATTAACTTTAATTGAAGGTGAAAGACTACCCAGTGGTTGTAGAGTGCTTGCAGATGCAAATGCCATACCACTTATAATAAGATTCCTTGGTTCACCTTCTCCTGGATTGCAGGATAAGTCTCTGAATGCTCTGGAAAGGATTTTTAGGCTATTGGAGTATAAACAGCAGTATGGACCCTCAGCTCAAATGCCTTTAGTTGACTTGACTCAACGTGGTAATGGTAGCATAAGATCCCTGGCAGCTAGAATATTAGCACATTTGAATGTCTTGCATGATCAATCTTCATATTTCTAG 3018 0.4112 MMVLDALNSGPTSEAISQIIETIADFLYYASDVLVKKDSFKELSAYLERISPILKALKKGKVRDSERFNHAIEILSREVRDAKQLAEECSKKNKVYLLLNCRTIIKRIQNSTSEISRAIGLLPLATQGLSNGIVEEIVKLCENMQAAEFKAAIAEEEILEKIESGIQEKNVDRSYANDLLVLIADAVGITNEKSTMKKELEEFKSEIENARLRKDLAEAIQMDQIIALLERADAASSPRQKELKYFNKRRSLGSQPLEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFADGNELCPLTMVPLDTSVLRPNKTLKQSIEEWKDRNTMITIASVKEKIQSGDGEEVLHCLEKLQDLCEQKGQHREWVLLENYIPVLIRLLNAKNRDVRSNALVILCMLAKDSEDAKERIANVDNAIESIVHSLGRRLGERKLAVALLLELSKYDLLKERIGKVQGCILLLVTMSSSDDHQSARDATELLENLSYSDHNVIQMAKANYFKQLLQRLSTGSDEVKMMMATTLAEMELTDHNKESLFESGILAPLLDLVSHNDVQVKIVALKALKNLSSLKKNGLEMIRQGAARPLLNILFQHSIPSLSLWEHVAPITMQLAASTMSQDAQTPVSLLEYDEDVFNLFSLITYKMPDVRQYTIQTFYALCQSPSASYIRSKLRECTAVQVLVKLFETENQKLRGSAVKLFSCLVEGCDEAIIVANVNEKCIETLIRILKSSSDEEEIVSTLGIISSLPENHQITQWLLDAGALMIIYDYIQEGKNKDLQRSKLVENSVSALCRFTVQTYPDWQRKVAEIGIITVLVQLLESGSMLTKQRAALCLAQFSRSSPGLSRPLPKRKGLWCFSPSAGESGCLVHGGLCTVKTSFCLLEADAVVPLANVLEESDPGACEASLDALLTLIEGERLPSGCRVLADANAIPLIIRFLGSPSPGLQDKSLNALERIFRLLEYKQQYGPSAQMPLVDLTQRGNGSIRSLAARILAHLNVLHDQSSYF 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211856g00010 1005 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 540 582 IPR000225 GO:0005515
Stsc211856g00010 1005 SUPERFAMILY ARM repeat 334 999 IPR016024 -
Stsc211856g00010 1005 Coils Coil 137 157 - -
Stsc211856g00010 1005 CDD RING-Ubox_PUB 263 312 IPR045210 -
Stsc211856g00010 1005 Pfam Armadillo/beta-catenin-like repeat 530 569 IPR000225 GO:0005515
Stsc211856g00010 1005 Coils Coil 72 92 - -
Stsc211856g00010 1005 Gene3D - 857 1003 IPR011989 -
Stsc211856g00010 1005 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Stsc211856g00010 1005 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1005 - -
Stsc211856g00010 1005 Pfam U-box domain 263 329 IPR003613 GO:0004842|GO:0016567
Stsc211856g00010 1005 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Stsc211856g00010 1005 Coils Coil 186 220 - -
Stsc211856g00010 1005 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 329 IPR013083 -
Stsc211856g00010 1005 CDD MLKL_NTD 37 127 - -
Stsc211856g00010 1005 Gene3D - 12 127 IPR036537 GO:0007166
Stsc211856g00010 1005 SUPERFAMILY RING/U-box 251 331 - -
Stsc211856g00010 1005 Gene3D - 431 628 IPR011989 -
Stsc211856g00010 1005 Gene3D - 330 430 IPR011989 -
Stsc211856g00010 1005 SMART arm_5 706 745 IPR000225 GO:0005515
Stsc211856g00010 1005 SMART arm_5 363 403 IPR000225 GO:0005515
Stsc211856g00010 1005 SMART arm_5 664 704 IPR000225 GO:0005515
Stsc211856g00010 1005 SMART arm_5 405 445 IPR000225 GO:0005515
Stsc211856g00010 1005 SMART arm_5 798 838 IPR000225 GO:0005515
Stsc211856g00010 1005 SMART arm_5 529 569 IPR000225 GO:0005515
Stsc211856g00010 1005 SMART arm_5 917 957 IPR000225 GO:0005515
Stsc211856g00010 1005 Gene3D - 630 855 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211856g00010 Stsc-Chr211856 38470 42863 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211856g00010 261 1005 U-box Gene Family AT1G76390 28.897 6.96e-67 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211856g00010 - - gmx:100799969 1405.58