Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211856g00009 ATGAGGCCGGTTTTCGTTGGGAACTTTGAGTATGATACCCGTCAGTCAGAGCTTGAACGCTTGTTCGCCAAGTATGGCAGGATCGAGCGTGTTGACATGAAATCTGGGTTTGCTTTTGTCTATTTTGAGGATGAGCGAGATGCTGAAGATGCAGTTCGTGCTCTTGATAACTTCCCATTTGGTTATGAGAAGCGAAGGCTGTCTGTAGAGTGGGCTAGGGGTGAACGTGGTCGCCATCGTGATGGCTCAAGGTCAAACCAGAGGCCCACAAAAACCCTATTTGTGATTAATNNNNNNNNNNCAATTCGCACCCGAGTTCGTGACATAGAAAGACATTTTGAACCTTATGGGAAGGTTCTTCATGTTCGAATTCGTCGTAACTTTGCATTTGTGCAGTTTGAAACACAAGAAGAGGCTACTAAAGCTCTTGAGTGTACACATATGAGCAAGATATTGGATAGGGTAGTGTCTGTGGAGTATGCTCTGAGGGATGATGATGAAAAGGGTGACAGATATTATGACAGTCCTAGAAGAGGTTATGGGAGATCACCCAGTCCAGGTTATAGGAGGCGACCAAGTCCTGACTATGGCCGTCCACGCAGTCCTGTGTATGATAGGTACAGTGGTCCAGCCTATGATAGGCGTAGGAGCCCTGAATATGGTAGGCCTCGCAGTCCTGAGTATGGTAGGAACAGGAGTCCTGAATATGGGAGACATCGCAGCCGAACACCAATTCGAAGATCCAGAACTTAA 753 0.4635 MRPVFVGNFEYDTRQSELERLFAKYGRIERVDMKSGFAFVYFEDERDAEDAVRALDNFPFGYEKRRLSVEWARGERGRHRDGSRSNQRPTKTLFVINXXXXIRTRVRDIERHFEPYGKVLHVRIRRNFAFVQFETQEEATKALECTHMSKILDRVVSVEYALRDDDEKGDRYYDSPRRGYGRSPSPGYRRRPSPDYGRPRSPVYDRYSGPAYDRRRSPEYGRPRSPEYGRNRSPEYGRHRSRTPIRRSRT 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211856g00009 250 SMART rrm1_1 3 70 IPR000504 GO:0003723
Stsc211856g00009 250 SMART rrm1_1 92 159 IPR000504 GO:0003723
Stsc211856g00009 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Stsc211856g00009 250 SUPERFAMILY RNA-binding domain, RBD 4 88 IPR035979 GO:0003676
Stsc211856g00009 250 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 92 238 - -
Stsc211856g00009 250 FunFam Serine/arginine-rich splicing factor RS31 85 174 - -
Stsc211856g00009 250 MobiDBLite consensus disorder prediction 167 250 - -
Stsc211856g00009 250 MobiDBLite consensus disorder prediction 209 241 - -
Stsc211856g00009 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 163 IPR000504 GO:0003723
Stsc211856g00009 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 60 IPR000504 GO:0003723
Stsc211856g00009 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 156 IPR000504 GO:0003723
Stsc211856g00009 250 SUPERFAMILY RNA-binding domain, RBD 82 189 IPR035979 GO:0003676
Stsc211856g00009 250 Gene3D - 85 173 IPR012677 -
Stsc211856g00009 250 Gene3D - 1 84 IPR012677 -
Stsc211856g00009 250 FunFam Serine/arginine-rich splicing factor RS31 1 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211856g00009 Stsc-Chr211856 34568 37249 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211856g00009 4 199 Eukaryotic Initiation Factors Gene Family AT1G49760 24.312 7.31e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211856g00009 K12893 - gmx:100797709 375.941