Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211856g00006 ATGGATTCTGATTCTGTGTTGGCATTGCCTGAGAGCAATGGATTCAAAACAAGGGACACTCAAGATTTTGAGGAAGACTTTGTAGAGAAAGATCCTACTGGCCGCTATCTTAGGTACAATGAAATCTTGGGCAAGGGTGCTTTCAAGACTGTTTATAGGGGCTTTGATGAAGTTGATGGAATAGAAGTTGCTTGGAACCAAGTCAGGATTGATGAACTCTTAAGATCTGCAGATGATGTTGAGAAGTTGTACTCCGAAGTAAACCTATTGAAGTCTCTGAACCATGAAAACATCATTAAGTTCTATAATTCTTGGATTGATGATAAGAAGAAAACTGTTAACATTATTACTGAGCTATTCACATCTGGAAACCTAAGACAATACCGTAAGAAGCATAGATATGTTGACATGAAAGCCATTAAAGGTTGGGCTCGACAGATTCTTCAAGGTCTGGTATATCTTCACGGTCACAAGCCGCCTATTATTCACAGAGACTTGAAATGTGACAACATCTTTGTAAACGGGAACCATGGAGAAGTCAAGATCGGAGATCTTGGTTTGGCAACTGTTATGCAGCAACCAACTGCTCGAAGTGTTATTGGGACCCCTGAGTTTATGGCTCCAGAGCTATATGAAGAGGAATACAATGAACTCGTGGATGTCTATTCTTTTGGGATGTGCATGTTGGAAATGGTTACTTTTGAGTACCCGTATAGTGAATGCAAAAATCCAGCCCAAATTTACAAGAAAGTTACCTCTGGAATCAAACCTAATTCCCTTAACAGGGTGAGTGATCCCCAAATTAAGGAGTTTATCAACAAATGTCTTGTTCCTGCGTCTGAGAGATTGTCCGCAGAGGACCTTCTTAAAGATCCATTTCTGCAAGTCGAGTGTTCCAAGGATCCAACCCTTAATCCCTTAAACTCACCTAATAAATCTCCAAAGGCTATAGATAAGCCGAAGTCTGGTCCTTTATCTATGGACTCGGAAGCTGACTGCAAAAATGTGTCTGTGAGTACCTGTGCTGAAAACAGCCATGGAAGTTCACTTTGTCCACTTCTTGAAGTTCGGCGGACATACAAAAACAATGAGTTTAGATTGAAAGGGACCAAAAATGATGATATCTCGGTGTCACTAATCTTGCGTATTGCCGATTCTTGTGGTCAGGTAAGGAATATACATTTCCTCTTCTACCTTGAGACGGATACTGCAGTTTCTGTGGCGTCAGAGATGGTTGAAAATTTGGAGCTATCAGATCATGATGTAGCCTTCATAGCTGAGCTTATTGATTACTTGATAATGAAGCTATTACCTCAGTGTAAGCCCTCAAATGCAGGATATAGTCATGGTCATTTTCCTGTGCTAAGCAGTCCTCGCTCTGAAATGGTTTTTGATCAACACAACGCACAGGGTCCTGTCCAAACCAATGCTCCCTCCGAATTGGTTGTCAATCAAGAGAACTTGACTCCGCTTGGTTCTATCCAAACAGAAGATTTTGAGACAGCCAATGGAAGCTTCATGTTTAACAATGGTAATAATGCTGCTTTTGTTGGTGAGTATAATTCTTCTCCTAGTTTGACTAGCTTGGAAGATCAAGATTGGCAAGACCCGTCAGAGTCTGATATAGCCGTTGAAGATGCTTGCATGAAAAATGAATACTGTCTGGATTCTGATGCTGATGGGAGTGATAAGGGATTGAGTTGGTCCAACTTAGAAATGCAGTTGGCAGATACATTCTGGAAATGTTGTAAATTGCAGGCTACAAACTGCTGTACTGCAGAAAGCATTGTACTGAGTGGAATCTCAAAGAACTCTTCTCACTCTACAATCCCAAACTTTTGGGGAACACCTAATGCTTTGAGCTTGACAAGCAGCGATTCTTCTTTGTCTCCAACGGAGAAAGACATCGATCATGAGCTAAAGCATGAACTGGAAGCGATCGAATCGCAGTATCAACTTTGGTTCCAAGAACTTTCAAGACAGAAGTTGGAAGCCTTGGAAGCCACCAGAAAGAAATGGACAGCCAGAAAGAAACTAGTTGTTCATTGA 2049 0.4124 MDSDSVLALPESNGFKTRDTQDFEEDFVEKDPTGRYLRYNEILGKGAFKTVYRGFDEVDGIEVAWNQVRIDELLRSADDVEKLYSEVNLLKSLNHENIIKFYNSWIDDKKKTVNIITELFTSGNLRQYRKKHRYVDMKAIKGWARQILQGLVYLHGHKPPIIHRDLKCDNIFVNGNHGEVKIGDLGLATVMQQPTARSVIGTPEFMAPELYEEEYNELVDVYSFGMCMLEMVTFEYPYSECKNPAQIYKKVTSGIKPNSLNRVSDPQIKEFINKCLVPASERLSAEDLLKDPFLQVECSKDPTLNPLNSPNKSPKAIDKPKSGPLSMDSEADCKNVSVSTCAENSHGSSLCPLLEVRRTYKNNEFRLKGTKNDDISVSLILRIADSCGQVRNIHFLFYLETDTAVSVASEMVENLELSDHDVAFIAELIDYLIMKLLPQCKPSNAGYSHGHFPVLSSPRSEMVFDQHNAQGPVQTNAPSELVVNQENLTPLGSIQTEDFETANGSFMFNNGNNAAFVGEYNSSPSLTSLEDQDWQDPSESDIAVEDACMKNEYCLDSDADGSDKGLSWSNLEMQLADTFWKCCKLQATNCCTAESIVLSGISKNSSHSTIPNFWGTPNALSLTSSDSSLSPTEKDIDHELKHELEAIESQYQLWFQELSRQKLEALEATRKKWTARKKLVVH 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211856g00006 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Stsc211856g00006 682 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 377 433 IPR024678 GO:0004674|GO:0005524
Stsc211856g00006 682 ProSiteProfiles Protein kinase domain profile. 37 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211856g00006 682 Gene3D Phosphorylase Kinase; domain 1 20 118 - -
Stsc211856g00006 682 FunFam probable serine/threonine-protein kinase WNK9 120 299 - -
Stsc211856g00006 682 Gene3D - 375 445 - -
Stsc211856g00006 682 SMART serkin_6 37 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211856g00006 682 MobiDBLite consensus disorder prediction 304 328 - -
Stsc211856g00006 682 Gene3D Transferase(Phosphotransferase) domain 1 120 300 - -
Stsc211856g00006 682 CDD STKc_WNK 35 294 - -
Stsc211856g00006 682 FunFam Probable serine/threonine-protein kinase WNK1 22 118 - -
Stsc211856g00006 682 Pfam Protein kinase domain 40 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211856g00006 682 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 19 675 - -
Stsc211856g00006 682 SUPERFAMILY Protein kinase-like (PK-like) 38 295 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211856g00006 Stsc-Chr211856 27573 30873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211856g00006 24 436 MAP Kinase Kinase Kinase AT1G64630 63.614 6.55e-179 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Stsc211856g00006 Pkinase 6e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211856g00006 K08867 - gmx:100809602 835.484