Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211856g00002 ATGGAAGGGATATCTCCGAATTCTTCATGCACAGGAAGGACAGTGTTGGAGAAGAAAGCAAGGCCACAAGAGCAATTGAACTGTCCAAGGTGCAATTCAACCAACACAAAGTTTTGTTATTATAACAACTACAGCCTCACTCAGCCCAGATACTTCTGCAAGACTTGCAGAAGGTACTGGACCGAGGGAGGCTCTCTTAGAAACGTCCCCGTCGGTGGCGGTTCTAGGAAGAACAAGAAGATCATTTCATCTTCAGCTTCTTTATCTTCGTCTTCGGCACCAAAGGTTCCAGATTTGAACCCACCCAGCCTCGCTTCCATTTCACCACAAAACCCTAATGATAATAAAATCATGCAAGGAGGAGGGCATGATCTCAATTTGGCTTTTCATCCAGCTATGGAGAACTATCATCATCATCATCATGCCTTGTCCGCGTATATTGAGATGCCGAAACTCGAAACCGGAGGAGGTGAAAATGGATCTTCTTCTGCTGCTGCTGCTTCTCTTTCAGCGGTTGAGCTGCTAAGATCTTCTGGGATGGCTGGTACTCCTAGAGGAGGATTGAATAATATTCCTTATGTTCATTCTTCATTGATGCCAAACTCAAATGCTCTTTTCCCTTCTGGGTTTCCCATGCAAGAGATTAAGCCCAGCCTTGGCTTTTCTTTGATTGATGGGCTTGGAAGTAGATCATCATATAATAATAATGGTGGGGAGCAAGTAGAGAATAATAATAATGGGAGGCTTCTGTTCCCTTTTGGAGAAATCAAGCATCATCATCAGCTTTCTTCAGCGGCAGGTGTTGAACTTGACCAAAATAATAAAGAACAAGCTGGGAACAATTCAACTGGGTTTTGGACTGGAATGATTGGTGAAGGCTCATCTTGGTAA 891 0.4377 MEGISPNSSCTGRTVLEKKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKIISSSASLSSSSAPKVPDLNPPSLASISPQNPNDNKIMQGGGHDLNLAFHPAMENYHHHHHALSAYIEMPKLETGGGENGSSSAAAASLSAVELLRSSGMAGTPRGGLNNIPYVHSSLMPNSNALFPSGFPMQEIKPSLGFSLIDGLGSRSSYNNNGGEQVENNNNGRLLFPFGEIKHHHQLSSAAGVELDQNNKEQAGNNSTGFWTGMIGEGSSW 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211856g00002 296 ProSiteProfiles Zinc finger Dof-type profile. 26 80 IPR003851 GO:0003677|GO:0006355
Stsc211856g00002 296 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 190 IPR045174 GO:0003700|GO:0006355
Stsc211856g00002 296 MobiDBLite consensus disorder prediction 78 117 - -
Stsc211856g00002 296 ProSitePatterns Zinc finger Dof-type signature. 28 64 IPR003851 GO:0003677|GO:0006355
Stsc211856g00002 296 MobiDBLite consensus disorder prediction 70 121 - -
Stsc211856g00002 296 Pfam Dof domain, zinc finger 24 80 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211856g00002 Stsc-Chr211856 12735 14608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211856g00002 14 296 C2C2-Dof Transcription Factor Family AT3G61850 46.939 6.44e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc211856g00002 zf-Dof 3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211856g00002 - - gmx:778110 300.827