Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211856g00001 ATGGGAAGAGCTCCTTGTTGTTCAAAAGTTGGATTGCACAGAGGTCCATGGACTCCCCGAGAAGATGCATTACTCACCCAATATATTCAATCCCAAGGCGAAGGCCAATGGAGATCACTCCCTAAAAGAGCTGGCCTTCTTAGATGCGGGAAGAGTTGCAGGTTGAGATGGATGAACTATCTGAGACCAGATATCAAGAGAGGCAACATAACTCCCGAAGAAGACGACCTCATCATTCGTATGCATTCACTCTTAGGCAACAGGTGGTCCCTCATCGCTGGAAGGTTACCCGGAAGAACTGACAACGAAATCAAGAACTACTGGAACACCCACCTCAGCAAGAAGCTCCTCAGGAATCAACAAGATCCCAAGAAGAAGAAGAAGAAGAAGAAGCAGAAGCGGAAGAATGATGCAGAAGAGGCAGAGAAGACCGTTGTTTATTTACCCAAACCAATCAGAGTTACAGCTATTCCAAGAGCGCAAAGTACTCTAACATTGGAATCCAATTCAGGAAGCGCATCAACGAGTCACGACAAACAACAACAAGAAGTTGCGAATGAGGTAAATAATAATACTGAGGAGCTTGGATTATTTCTGGGCGATGACAACGGTGAAGATCATCATTATGATATTGACCAAGTAGTCAACGGATCTGATGAGGTGGATGGCGAATCGTGTGATTTTCTTGGGGACTGTGAACCGTTAGAGAAGTTGTATGAAGAGTACTTTCAGCTCTTGAACACGGATAACGATAACCCACTCCAATTCGATTCTTTTGCTGAATCATTTCTACTCTGA 798 0.4436 MGRAPCCSKVGLHRGPWTPREDALLTQYIQSQGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLLRNQQDPKKKKKKKKQKRKNDAEEAEKTVVYLPKPIRVTAIPRAQSTLTLESNSGSASTSHDKQQQEVANEVNNNTEELGLFLGDDNGEDHHYDIDQVVNGSDEVDGESCDFLGDCEPLEKLYEEYFQLLNTDNDNPLQFDSFAESFLL 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211856g00001 265 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 183 - -
Stsc211856g00001 265 MobiDBLite consensus disorder prediction 115 142 - -
Stsc211856g00001 265 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc211856g00001 265 CDD SANT 16 61 IPR001005 -
Stsc211856g00001 265 FunFam MYB transcription factor 68 129 - -
Stsc211856g00001 265 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc211856g00001 265 Coils Coil 124 144 - -
Stsc211856g00001 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc211856g00001 265 MobiDBLite consensus disorder prediction 165 184 - -
Stsc211856g00001 265 Gene3D - 14 66 - -
Stsc211856g00001 265 FunFam Myb transcription factor 11 67 - -
Stsc211856g00001 265 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc211856g00001 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc211856g00001 265 CDD SANT 71 112 IPR001005 -
Stsc211856g00001 265 SMART sant 66 114 IPR001005 -
Stsc211856g00001 265 SMART sant 13 63 IPR001005 -
Stsc211856g00001 265 Gene3D - 71 144 - -
Stsc211856g00001 265 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc211856g00001 265 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211856g00001 Stsc-Chr211856 1354 2755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211856g00001 4 152 MYB Transcription Factor Family AT3G13540 64.430 5.18e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc211856g00001 Myb_DNA-binding 5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211856g00001 K09422 - gmx:778044 325.479