Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211853g00005 ATGCGAATACTTGATCAAGAATATAGAAACCTTGAAAATGAGCAGAAGAAACTTGAAAGAAATGCAGAATCTGTGAACAGTGAATTGTTCACAGAATGTCAGGAATTACTGCCAATGTTTGGCTTGTCATATATTATTGCCCCAATGGAAGCTGAAGCACAATGTGCTTTCTTTGAAACTACAAAACTGGTTGATGGTGTTATAACTGATGATTCTGATGTCCTTCTATTTGGAGCTCGTAGGGTTCACAAGAACATATTTGATGATCACAAATACATAGAGACATACTTCATGGAGGACATTGAGAAGGAACTTGGATTGAGCAGAGAAAAATTAGTACGCATGGCACTACTACTTGGGAGTGATTATACTGAAGGTGTAAGTGGGATTGGGATTGTCAATGCTATTGAGGTTGTGAATGCATTCCCTGAGGAAGATGGCCTCTTGAAATTCCGGCAGAGGGTTGAGTCACCAGATCCCACCATTCTTGGAAAGTTGAATACAAAAAGTGGATCCAATACAAGAAAGAAAGGATCAAAAGAGCCATTGCCAGACCAAATTATCAGTGATGTAAGGAACTAG 582 0.3918 MRILDQEYRNLENEQKKLERNAESVNSELFTECQELLPMFGLSYIIAPMEAEAQCAFFETTKLVDGVITDDSDVLLFGARRVHKNIFDDHKYIETYFMEDIEKELGLSREKLVRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLLKFRQRVESPDPTILGKLNTKSGSNTRKKGSKEPLPDQIISDVRN 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211853g00005 193 Gene3D - 2 106 - -
Stsc211853g00005 193 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 37 54 IPR006084 -
Stsc211853g00005 193 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 58 78 IPR006084 -
Stsc211853g00005 193 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 112 127 IPR006084 -
Stsc211853g00005 193 SMART xpgineu 38 107 IPR006086 GO:0004518
Stsc211853g00005 193 MobiDBLite consensus disorder prediction 160 193 - -
Stsc211853g00005 193 Gene3D - 107 163 - -
Stsc211853g00005 193 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 107 156 IPR036279 -
Stsc211853g00005 193 SUPERFAMILY PIN domain-like 12 122 IPR029060 -
Stsc211853g00005 193 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 185 - -
Stsc211853g00005 193 FunFam DNA repair protein UVH3 107 164 - -
Stsc211853g00005 193 Coils Coil 1 28 - -
Stsc211853g00005 193 Pfam XPG I-region 41 122 IPR006086 GO:0004518
Stsc211853g00005 193 CDD PIN_XPG_RAD2 24 108 - -
Stsc211853g00005 193 SMART HhH_4 109 142 IPR008918 GO:0003677|GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211853g00005 Stsc-Chr211853 42623 44259 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211853g00005 7 139 Core DNA Replication Machinery Family AT5G26680 29.412 3.23e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211853g00005 K10846 - gmx:100820295 313.153