Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211850g00005 ATGCCCAACAATGCAGACCAGATCCATGATTTTGTCAACTCAACTTGGAGACTTTGTTCTTCTTTAGGTGGTTGGGTTTCGGGTTTAATATTTAAACCTTGCAAAAAATTGGTCGGCATAGCATTTACTAGTTCCCTTTCTAGGTTGGCTGACGGAAACGACAATTGCCATTCAGAGTCCATGGATGAATGTATATATATTAGTTCATCGGACGATGACCTTGAGGAGATAGAAGATCCGAAGAGGAGTCTCCCTCAATGGGCTACTGCCGAAAGGAATTCAGATTATGGTCAACGGTCTAGGCATGATATTTCTTCAAGAGGGGCAAATTATTCAACTGCTAGCTCTTCCAGTGTTAATAATAGTCATTCACAAATCAAGCTTCATGCTCAACCTTTATCTAGCAAAAATGGACTGAATCAAAGAGTTGCACACAGAGAAGAACCGTCATATCATGCACAGAATGGAAACACAAGTCAGTCTCCTCAACAGGCTTTCAAGCGGGCTCTTCCTTTGACTCTTAATCCATCTACAACAAGGGTTCCTCCATCTTCATCATTTGCACCAGATAGAAGATTAAGTAACTTAAAGGATAACGTGAACAACAGTCAGTTTTTTGATACAAATAGGAATCGTCCCCATGGAGTAGGACCAAGCACGCTGAGTGACAAGTCCTACAATCGTGGCTCTTTTATGAGGGGGAGTGATGACGATCGCTTGATGCATCAAAATGGTGTGATTAGGGTTCTTCCTCCATCTTTGATGCATGGCAAGTCTATACCTCCACAGTTTGCTAGTTCCAGTGAACCGGCGTTTCGTGGTGCAGGTGATGAACGGGCTCCTGAAAGTGATGAGAGACTAATTTATGAGGCCATTGTGCAGGATCTCAATCCCAATAATAGAACAGAAGTTGATGTATCTGATGGTCTAATGTCTGTCTCCCTTCTCAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAGAAGTTTGCATTGCCTTGGGGGGATTTTGGCTGATGATCAGGGCCTTGGCAAGACAGTTTCAATGATTGCCCTCATCCTAATGCAGAGGAAAAGGCCAGCTGCTGGTACACTTGTTGTTTGCCCTGCAAGTGTTCTTCGACAATGGGCCAGAGAGCTTAAAGAAAAAGTTGTTGAAGAGCAGAAACTTGCTGTTTTGATTTATCATGGGGGCAGCAGGACAAAGGATCCTACTGAACTTGCAAGATATGATGTGGTTCTCACAACATATGCTATTGTGACTAATGAAGTTCCAAAGCAGCCGTTGGTTGAGGAAGATGATATTGATGAAAAAATGGGGGAAAGATTTGGGATATCCTCTGAATTTGCTGCCGGTAAAAAGAGGAAGCAGTTATACAATGGAAATAAGAAAAGTAAAAAGGGTAGAAAGGGAATAGACAACTCTTCAATTGAGTGTGCTTCTGGTCCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACAATAAAGAACCATAGAACTCAGGTAGCTAGAGCTTGTTGCAGTCTTAGGGCCAAAAGAAGGTGGTGCTTATCTGGGACACCTATTCAAAATACCATCGATGATCTTTATAGCTACTTTAGGTTCCTGAAGTATGATCCTTATGCTGTGTATAAATCGTTCTACAATACAATAAAAGTTCCAATATCCAGAAATTCTATCCAAGGGTACAAGAAGCTTCAAGCAGTTCTGAGGGCCATTATGCTTCGTCGTACAAAAGGAACTTTGATCGATGGGAAGCCAATAATCAATTTACCTCCTAAAACGATTGAGCTAACTAAGGTGGATTTTTCCGTTGAGGAGCGGGCCTTCTATATGAAGTTGGAAGCAGATTCACGTTCCCAATTTAAGGCATATGCTGCTGCTGGCACTGTGAATCAAAACTATGCAAATATTCTTTTGATGCTTTTGCGTCTTCGTCAAGCTTGTGATCACCCGCGTCTTGTTAAAGATTATTTTTCTGATCCTCTTGGGAAATCCTCTGTGGAAGGGGCAAACTCACTTCCAAAGGAGACGTTGATTAATCTGTTTAATAGTTTGGAAACAACCTTTGCTATATGCTGTGTTTGCGAGGATCCACCTGAAGACCCTGTTATTACAATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCAGACAGCTTGACTGGTGATGATAATAATACATGCCCTGCTCTTGGTTGTAAAAAAGCACTTGCAGAAGATGTTGTTTTCTCCAAAGCTACTTTGAGGAGTTGTTTGTCTGATGAACTTGGTGGTAGTAATTCCGTAAAAGCGCATGATTTTGATCATTCACTAGTGCAGCAGAGGGAGTACAGTTCATCTAAAATCAAAGCTGTCCTTGAGATTCTGCATTCAAATTGTAAATTAAATTCTGCTGGAAGCCATAAAGATTCACCATCTTCTGATGATTCATATATTGAAGATCTCGACTCAGATGCTAGGATTATGAAACACACAAGAAAATATTCAGAGTCCACAACTGTAGGACCAATAAAGGCTATAGTATTTTCCCAGTGGACTAGCATGTTGGACTTAGTTGAGGAATCATTGCGACAATCCAGTATACAATACAGGAGACTTGATGGGAGGATGTCTCTGGTAGCTAGGGACAGATCTGTCAAAGATTTCAATACTGATCCGGAGGTAACTGTTATGCTGATGTCGCTAAAAGCAGGAAATCTTGGTTTGAATATGGTTGCTGCATGTCATGTTATCCTTTTGGATCTTTGGTGGAATCCAACAACTGAAGATCAGGCTATTGATCGAGCTCATCGAATTGGACAGACCCGTCCTGTTACTGTGACACGGCTCACTGTAAAAGATACAGTTGAAGACAGAATACTGGCTCTTCAGGAAGAGAAGAGGAAAATGGTTGCATCCGCTTTTGGCGAAGACCATGCCGGCAGCTCCGCGACTCGCCTTACAATGGATGATCTGAAATATCTGTTCATGGTGTAG 3006 0.4172 MPNNADQIHDFVNSTWRLCSSLGGWVSGLIFKPCKKLVGIAFTSSLSRLADGNDNCHSESMDECIYISSSDDDLEEIEDPKRSLPQWATAERNSDYGQRSRHDISSRGANYSTASSSSVNNSHSQIKLHAQPLSSKNGLNQRVAHREEPSYHAQNGNTSQSPQQAFKRALPLTLNPSTTRVPPSSSFAPDRRLSNLKDNVNNSQFFDTNRNRPHGVGPSTLSDKSYNRGSFMRGSDDDRLMHQNGVIRVLPPSLMHGKSIPPQFASSSEPAFRGAGDERAPESDERLIYEAIVQDLNPNNRTEVDVSDGLMSVSLLRHQKIALAWMLQKETRSLHCLGGILADDQGLGKTVSMIALILMQRKRPAAGTLVVCPASVLRQWARELKEKVVEEQKLAVLIYHGGSRTKDPTELARYDVVLTTYAIVTNEVPKQPLVEEDDIDEKMGERFGISSEFAAGKKRKQLYNGNKKSKKGRKGIDNSSIECASGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSIQGYKKLQAVLRAIMLRRTKGTLIDGKPIINLPPKTIELTKVDFSVEERAFYMKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDYFSDPLGKSSVEGANSLPKETLINLFNSLETTFAICCVCEDPPEDPVITMCGHVFCYQCVSDSLTGDDNNTCPALGCKKALAEDVVFSKATLRSCLSDELGGSNSVKAHDFDHSLVQQREYSSSKIKAVLEILHSNCKLNSAGSHKDSPSSDDSYIEDLDSDARIMKHTRKYSESTTVGPIKAIVFSQWTSMLDLVEESLRQSSIQYRRLDGRMSLVARDRSVKDFNTDPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRLTVKDTVEDRILALQEEKRKMVASAFGEDHAGSSATRLTMDDLKYLFMV 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211850g00005 1001 MobiDBLite consensus disorder prediction 173 238 - -
Stsc211850g00005 1001 MobiDBLite consensus disorder prediction 103 135 - -
Stsc211850g00005 1001 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 330 548 IPR014001 -
Stsc211850g00005 1001 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 688 753 IPR013083 -
Stsc211850g00005 1001 SMART ultradead3 311 565 IPR014001 -
Stsc211850g00005 1001 Gene3D - 601 1000 IPR027417 -
Stsc211850g00005 1001 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 595 1000 IPR027417 -
Stsc211850g00005 1001 SMART ring_2 702 741 IPR001841 -
Stsc211850g00005 1001 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 466 598 - -
Stsc211850g00005 1001 SMART helicmild6 860 943 IPR001650 -
Stsc211850g00005 1001 Gene3D - 291 436 IPR038718 -
Stsc211850g00005 1001 Gene3D - 453 597 IPR038718 -
Stsc211850g00005 1001 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 830 996 IPR001650 -
Stsc211850g00005 1001 ProSitePatterns Zinc finger RING-type signature. 717 726 IPR017907 -
Stsc211850g00005 1001 Pfam SNF2-related domain 318 664 IPR000330 GO:0005524|GO:0140658
Stsc211850g00005 1001 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 351 437 - -
Stsc211850g00005 1001 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 97 1000 - -
Stsc211850g00005 1001 CDD SF2_C_SNF 848 953 - -
Stsc211850g00005 1001 ProSiteProfiles Zinc finger RING-type profile. 702 739 IPR001841 -
Stsc211850g00005 1001 SUPERFAMILY RING/U-box 699 753 - -
Stsc211850g00005 1001 MobiDBLite consensus disorder prediction 173 229 - -
Stsc211850g00005 1001 MobiDBLite consensus disorder prediction 76 135 - -
Stsc211850g00005 1001 CDD DEXDc_SHPRH-like 315 586 - -
Stsc211850g00005 1001 Pfam Helicase conserved C-terminal domain 847 943 IPR001650 -
Stsc211850g00005 1001 MobiDBLite consensus disorder prediction 257 282 - -
Stsc211850g00005 1001 Pfam Zinc finger, C3HC4 type (RING finger) 702 739 IPR018957 GO:0046872
Stsc211850g00005 1001 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 586 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211850g00005 Stsc-Chr211850 21657 27979 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211850g00005 359 901 RAD5 or RAD16-like Gene Family AT1G50410 67.636 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc211850g00005 SNF2_N 2.8e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211850g00005 - - qsa:O6P43_032256 1248.42