Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211850g00004 ATGGCGGTTTCCTTTCGGAGGATGGCACTACTCCGTCGTTCTTCCCATCTTCTTCTCCCTATTCCCATGCAGCATTCTTCACCTCCAAAGGTAACTAACTCCCCGTTTTCCCCAAGGCATTGTAGTTCTTCAACAAGGGAAAATACTTCAAATGAAGAATATCAGAGATTGTTAGCACGGAGAGAAGAACCTCACCAGGCTGTTGATTTGAATTTTCATGGATCTAAGAGAAGGTTTCGTCGTGCTTCATCTATGTCATTTTCAGAAATCAAGCAGGCTGTTGATAGACTATATCAAAGATATTCACGGAGAGAAGCTGCTGCTCCTGATTTGAATTTTCATCCATCTACAACAAAAACAACTGTTCCTGCTTTATCTTCGTTGTTTTCACCAGATAGCAGATTAAGTAACTCAAAGAATAACATAAATTACTACACTAAGTTTTATAGGAATCGTGTCTCTTTTAGGAGGCGGAGGTGGAGGGATGTTGATCTTCGCTTCATGCGTCGTCCAAGTGGTGCGTTGCATCGTGCCTCTGATGAATGTGATCCTGAAAGTGACGAGAGACCAATTTATAAGACCATTCTGGAGGATCTCAGTCAACCGATAACCGAAGCTAATGTATCTGATGGTCTAATGTCTGTCCCTCTTCTGAGGCATCAGAAAATTGCTTTGGCTTCGATGCTTCAAAAGGAAACCAGAAGTTCGCCTTGCCTTGGGGGCTTTTTGGCTGATGATCAGGGCTTAGGCAAGACAGTTTCAATGATTGCCCTCATCCTAATGCAGAGGTCACTGCAATCAAAATCAAAAACAGTCGATGCATGCAATCATAAAGCAGAGGCTTTGAATTTGGATGACTATGATGAACAGGTTACTGTTGATGTGGAAAGGCTTGAAAGTAAAGAAGAATCTGGTGATGCAAAACCTAGTACAGAACCTAATAGTTCAACACGAACACCAAGTAGGAAAAAGCCAGCTGGTGGTACACTTATTGTTTGCCCTGCAAGTATTCTTCGACAATGGGCCAGAGAGCTTAAAGAAAAAGTTGCTGAAGAACAGAAACTTACTGTTTTGGTTTATCATGGGAGCAATAGGACAAAGGATCCTATTGAACTTGCAAATTATGATGTGGTCCTCACAACATATGCTATTGTAAGTAATGAATTTCCAAAGGAGAATGATAATACTGATTCTTCAGTTAAGCGTGCTTCTGGTCCTCTTGAAAAAGTAGATTGGTTTAGGGTTATTCTAGATGAAGCTCAAACAATAAGAACCATAAAACTAAGGCAGCTAAAGCTTGCTGCAGTCTTAGTGCCAAAACAAGGTGGTGCTTATCTGGGACACCCATTCAAAATACTATTGATGATCTGTATAGCTACTTTAGGTTCCTGA 1392 0.4102 MAVSFRRMALLRRSSHLLLPIPMQHSSPPKVTNSPFSPRHCSSSTRENTSNEEYQRLLARREEPHQAVDLNFHGSKRRFRRASSMSFSEIKQAVDRLYQRYSRREAAAPDLNFHPSTTKTTVPALSSLFSPDSRLSNSKNNINYYTKFYRNRVSFRRRRWRDVDLRFMRRPSGALHRASDECDPESDERPIYKTILEDLSQPITEANVSDGLMSVPLLRHQKIALASMLQKETRSSPCLGGFLADDQGLGKTVSMIALILMQRSLQSKSKTVDACNHKAEALNLDDYDEQVTVDVERLESKEESGDAKPSTEPNSSTRTPSRKKPAGGTLIVCPASILRQWARELKEKVAEEQKLTVLVYHGSNRTKDPIELANYDVVLTTYAIVSNEFPKENDNTDSSVKRASGPLEKVDWFRVILDEAQTIRTIKLRQLKLAAVLVPKQGGAYLGHPFKILLMICIATLGS 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211850g00004 463 MobiDBLite consensus disorder prediction 296 328 - -
Stsc211850g00004 463 MobiDBLite consensus disorder prediction 26 50 - -
Stsc211850g00004 463 CDD DEXDc_SHPRH-like 217 434 - -
Stsc211850g00004 463 SMART ultradead3 213 453 IPR014001 -
Stsc211850g00004 463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 434 IPR027417 -
Stsc211850g00004 463 Gene3D - 190 279 IPR038718 -
Stsc211850g00004 463 MobiDBLite consensus disorder prediction 309 323 - -
Stsc211850g00004 463 Gene3D - 314 449 IPR038718 -
Stsc211850g00004 463 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 232 463 IPR014001 -
Stsc211850g00004 463 Pfam SNF2-related domain 232 428 IPR000330 GO:0005524|GO:0140658
Stsc211850g00004 463 MobiDBLite consensus disorder prediction 21 50 - -
Stsc211850g00004 463 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 309 398 - -
Stsc211850g00004 463 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 56 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211850g00004 Stsc-Chr211850 17583 19370 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211850g00004 172 451 RAD5 or RAD16-like Gene Family AT1G50410 46.108 1.82e-79 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc211850g00004 SNF2_N 1.9e-33 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211850g00004 - - gmx:100811598 320.087