Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211850g00003 ATGGAGGAGCGGGATTTCTATAGGAAGTTGGAAGCAGATTCACGTTCGAAATTTAAGGCATATGCTGATGCAGGCACTCTGAGCCTAAACTTTAAAAATATTCGTGTACTGCTTTTGAAACTACTTTTGCGTCATCGTCAAGCTTGTAATCACCCACATCTTGTTAAAGAACATGTTTTTGATCCTCCTCGGAAATCCATTGGGGAAATGGCAAACTCACTGCCAAAGGAGAAATTGATTAATCTGTTTAACAGTTTGGAAACAGCCTCTGCTATATGCCGTTTGTGCAAGGATCGACCTGAAGACCCTGTTGTTACAATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCAGACAGATTGACTGGTTATGATAATAATACATGCCCTGCTCCTGGTTGTAAAGCAGCACTTGCAGAAGGTGTTGTTTTCTCCAAAGCCACTTTGAGGAGTTGTTTGTCTGATGAACTTGGTGATAGTAATCCTATAAAAGCGCATGATTTTAATCATTCACTAATACAGAAGCGTGAGTACACTTCATCTAAAATCAAAGCTCTCCTCGAGATTCTTCATTCAAATTGTAAACTAAGTAGTCCTAGCTCTGGTTTACTAAATTCTGCTGGAAGCCATAGAGGTTCAACATCTTCTGATGATTCATATATGAAACACACAAGAAAATATTCGGAGTCCACAACTGCAGGGCCAATAAAGACTATACTTTTTTCCCAGTGGACTAGAATGTTGGACTTAGTCCAGGCATCATTGGAGCAATCCGGTATACAATACAGTAGACTTGATGGGAGCATGTCTCTGGCAGCTAGGGACAGATCTGTTAAAGATTTCAATACTGAACCCGAGGTAACTGTTATGCTGATGTCACTTTTAGCAGGAAATCTTGGTTTGAATATGGTTGCTGCATCTCATGTTATTCTTTTGGATCCTTGGTGGAATCCAAAAGCTGAAGATCAAGCTATTGATCGAGTTCATCGAATTGGACAAACTCGTCCTGTTACTGTGACACGACTCACTATAAGAGATACAGTTGAAGACAGAATACTGGCTCTTCAGGAACGTAAGAGTAAAATGGCTGCATCTGCTTTTGGTGAAGACCGTACCGACAGTTCCCAGAATCGCCTTACAATTGATGATCTGAAATATCTTTTTGATGTAGATTTTTAG 1179 0.4012 MEERDFYRKLEADSRSKFKAYADAGTLSLNFKNIRVLLLKLLLRHRQACNHPHLVKEHVFDPPRKSIGEMANSLPKEKLINLFNSLETASAICRLCKDRPEDPVVTMCGHVFCYQCVSDRLTGYDNNTCPAPGCKAALAEGVVFSKATLRSCLSDELGDSNPIKAHDFNHSLIQKREYTSSKIKALLEILHSNCKLSSPSSGLLNSAGSHRGSTSSDDSYMKHTRKYSESTTAGPIKTILFSQWTRMLDLVQASLEQSGIQYSRLDGSMSLAARDRSVKDFNTEPEVTVMLMSLLAGNLGLNMVAASHVILLDPWWNPKAEDQAIDRVHRIGQTRPVTVTRLTIRDTVEDRILALQERKSKMAASAFGEDRTDSSQNRLTIDDLKYLFDVDF 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211850g00003 392 SMART ring_2 93 132 IPR001841 -
Stsc211850g00003 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 144 IPR013083 -
Stsc211850g00003 392 CDD SF2_C_SNF 174 342 - -
Stsc211850g00003 392 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 2 389 - -
Stsc211850g00003 392 ProSiteProfiles Zinc finger RING-type profile. 93 130 IPR001841 -
Stsc211850g00003 392 SMART helicmild6 249 332 IPR001650 -
Stsc211850g00003 392 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 215 380 IPR001650 -
Stsc211850g00003 392 SUPERFAMILY RING/U-box 89 131 - -
Stsc211850g00003 392 Pfam Helicase conserved C-terminal domain 236 332 IPR001650 -
Stsc211850g00003 392 ProSitePatterns Zinc finger RING-type signature. 108 117 IPR017907 -
Stsc211850g00003 392 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 391 IPR027417 -
Stsc211850g00003 392 Pfam Zinc finger, C3HC4 type (RING finger) 93 130 - -
Stsc211850g00003 392 Gene3D - 1 391 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211850g00003 Stsc-Chr211850 14046 17289 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211850g00003 2 388 RAD5 or RAD16-like Gene Family AT1G11100 48.259 9.31e-113 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211850g00003 - - gmx:100795142 508.064