Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211849g00002 ATGGCCAGAGTGATGATGTGGTTCTTGATTATTCTGCTCATCAACTCGTTGAACCCATCACATGGTGGCGAAGAAACTGAAAGTCAACAAGACCGTGAGCTTCTCTTATCGTTCAAAGCTTCAATCCACGACGATCCAGTTCACTCTCTCAGTAACTGGCTCCCAACCACTTCTTTATGCAACTGGAACGCCATCACTTGCAACATCAACAACAACAACTCTGCTGTCGTAGCCGTCGTCGTCACGGCCATCTCCCTCGCCGGTAAAAACATCTCCGGCGAGGCTTCTTCCTCCGTTCTCCACCTGCAAAACCTCACGTCACTCGACCTCTCCAACAACCAGCTTACAAAGCTCCTCCACTTCGATCAACCTCCTCCATTTCTCTCCCCACTCCGTTACCTCAACCTCAGCAACAACAATCTCACCGGTCCTCTGCCTCGCTCCTTGTTCTCCTCCTCTTTCTCGCTCCTGCACACTCTCGACCTCTCCAACAACATGTTCTCCGGCGAGATTCCTCCCCAAATTAGCCTCTTCTCCGCCCTAACCTACCTTGACATAGGAGGAAACCTTCTCGTCGGACACATTCCGACTTCCATAACCGAATTGAAGAATTTACAGTACTTCACTCTAGCTTCCAACCAGTTAGTCGGCGAAATTCCGAAAGAGATTCGAGCTATGAAGAATTTGAAGTGGATTTACTTCGGTTACAATAATCTCTCTGGTGAAATTCCCAGCGCCATTGGCGAGTTAGCTTCGTTGAACCACCTCGATCTTGTGTACAACAACCTCACCGGAGCTATTCCTGAATCCCTCGGAAACCTAACCGGTCTCGAGTACCTGTTCCTCTACCAGAACAAACTCAACGGTCCGATTCCTCGTTCAATCTTCAACCTCAAGAAGCTCGTGTCTCTTGATCTCAGCGATAACTCTCTCTCCGGCGAGATTCCCGAAGTCGTGGTGCTTCAGCTTTGGTCAAACTCGTTGACCGGGGAGATTCCGTTGGAACTTGGGAAGCGTAACAACCTAACGGTTTTGGATCTCTCTTCTAACAACCTCACCGGGAAGGTCTACTTCTTGGATATCTCCGGCAACCAATTTTCTGGAAGAATCGACGATAGACAATGGAGCATGCCGTCTCTTCAAATGCTCAATCTGGCTAACAATTTATTCGCCGGAGAGATTCCGAACTCGTTCGGGAGCGAGAACTTGGAGGATTTAGACTTATCTCAGAATCGATTCTCCGGTGAAATTCCTCGTGGAATATTCGAGAATTGGAAGGATTTAGTGCAGTTGAAGCTGCGAAACAACAATCTCTATGGTACTATTCCTGAAGAACTCTGTTCATGCAAGAAGCTTGTGGCATTAGACCTCAGCCATAACAATCTCAACGGTCAAATTCCGGTGAAGCTTGCTGAGATGCCGGTTTTAGGTGTTCTTGATTTGTCAGAGAACCAATTCTCCGGCGAGATTCCGCAGAATTTGGGGAAAGTGGAGTCTCTTGTTCAGGTTAACGTATCACACAACCGTTTCCATGGAATCTTACCTTCCACCGGAGCGTTCCTCGCAATCAACGCTAGTGCAGTCGCAGGGAACGATCTTTGTGACCGCGAAGGTGAAGCCTCTAACGGTTTGCCACCATGCAAGGGTTCAAGGAACCAGACATGGTTGTTCTTGGTTCTATGTTTTCTCTTTGGAGTGGTTGCGATTGCTGTTGCAGCTTTTCTGGTAGTTTTGGTGCGAAGAAAGAAGAGCATGGAGATGAGAAGGGTGGAGAATAACGAAGACGGCGGCACGTGGGAGATGCAGTTTTTCGATGCGAAAGCTTCGAGAACGATAACCATGGAAGACGTTGTGGCTTGTTCAAGAGAAGGGAAAGTGGTTTCGAAAGGAAGGAACTGGGTTTCGTACGAAGGGAAATGCATGGGAAGCGAAAACGACATGCGTTTTGTGGTGAAGGAAATCACTGATCCAACATCTCTTCCGCTGAGATTCTGGGAAGATACCGTGAAGTTTGAGAAGAAGGTTCGGCACGGTAACATTGTCAAGCTTGTTGCCACGTGTCGCTCAGGGAAGAGGGGGTACTTGGTTTATGAGAGTGTGGAGGGAGAGAGAAATCTCCCCGAGATTGTTAGCGGTTTGAGTTGGCAACGTAGGTGGAAAGTTGCGGTGGGGATCGCCAAGGCGCTTAAGTTCTTGCATTGTGAGTGTTGTTCTACGGTCTGGGAGCTTGCCGACGAGGTTCTCTTGCCGGAGGTTGTTTTGGTGGACGGAAAAGGTGTCCCTCGCCTCAAGCTCAGCCCTCCTTTCGATGTCAAGGGTTTCATGATCACTTCCCCTTACCTTGCACCAGAGGCAAGGAATAATAATAGTGGAGATGTGACAGAGAAGAGTGAAATATACGGATTCGGAGTTATGCTGATTGAATTATTGACTGGGAGAACCACTACGGACATTGAAGCAACAGGGAATGGAAATGGGGTGCACCACCATCAGAATGTTGTAGAGTGGGCCCGATACTGTTACTCTGACTGTCATATTGACACGTGGATTGATCCCGTGATCAAGGGTGGAGATGAGTCAACCCAATACCATAACGACGTCGTTGAGGCCATGAACCTCGCCTTACACTGCACCGCCACTGATCCTGAAGCCAGACCAAGCGCAAGAGAAGTTCTTAAGGCTCTAGAAGCTATTCACAGCAACAACACACAATTATTTTGCTCTTCATGA 2730 0.4839 MARVMMWFLIILLINSLNPSHGGEETESQQDRELLLSFKASIHDDPVHSLSNWLPTTSLCNWNAITCNINNNNSAVVAVVVTAISLAGKNISGEASSSVLHLQNLTSLDLSNNQLTKLLHFDQPPPFLSPLRYLNLSNNNLTGPLPRSLFSSSFSLLHTLDLSNNMFSGEIPPQISLFSALTYLDIGGNLLVGHIPTSITELKNLQYFTLASNQLVGEIPKEIRAMKNLKWIYFGYNNLSGEIPSAIGELASLNHLDLVYNNLTGAIPESLGNLTGLEYLFLYQNKLNGPIPRSIFNLKKLVSLDLSDNSLSGEIPEVVVLQLWSNSLTGEIPLELGKRNNLTVLDLSSNNLTGKVYFLDISGNQFSGRIDDRQWSMPSLQMLNLANNLFAGEIPNSFGSENLEDLDLSQNRFSGEIPRGIFENWKDLVQLKLRNNNLYGTIPEELCSCKKLVALDLSHNNLNGQIPVKLAEMPVLGVLDLSENQFSGEIPQNLGKVESLVQVNVSHNRFHGILPSTGAFLAINASAVAGNDLCDREGEASNGLPPCKGSRNQTWLFLVLCFLFGVVAIAVAAFLVVLVRRKKSMEMRRVENNEDGGTWEMQFFDAKASRTITMEDVVACSREGKVVSKGRNWVSYEGKCMGSENDMRFVVKEITDPTSLPLRFWEDTVKFEKKVRHGNIVKLVATCRSGKRGYLVYESVEGERNLPEIVSGLSWQRRWKVAVGIAKALKFLHCECCSTVWELADEVLLPEVVLVDGKGVPRLKLSPPFDVKGFMITSPYLAPEARNNNSGDVTEKSEIYGFGVMLIELLTGRTTTDIEATGNGNGVHHHQNVVEWARYCYSDCHIDTWIDPVIKGGDESTQYHNDVVEAMNLALHCTATDPEARPSAREVLKALEAIHSNNTQLFCSS 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211849g00002 909 SMART LRR_typ_2 202 226 IPR003591 -
Stsc211849g00002 909 SMART LRR_typ_2 401 424 IPR003591 -
Stsc211849g00002 909 SMART LRR_typ_2 154 178 IPR003591 -
Stsc211849g00002 909 SMART LRR_typ_2 128 152 IPR003591 -
Stsc211849g00002 909 SMART LRR_typ_2 102 123 IPR003591 -
Stsc211849g00002 909 SMART LRR_typ_2 250 274 IPR003591 -
Stsc211849g00002 909 SMART LRR_typ_2 377 400 IPR003591 -
Stsc211849g00002 909 SMART LRR_typ_2 473 497 IPR003591 -
Stsc211849g00002 909 SMART LRR_typ_2 298 322 IPR003591 -
Stsc211849g00002 909 SUPERFAMILY Protein kinase-like (PK-like) 624 901 IPR011009 -
Stsc211849g00002 909 SMART LRR_sd22_2 178 204 - -
Stsc211849g00002 909 SMART LRR_sd22_2 102 123 - -
Stsc211849g00002 909 SMART LRR_sd22_2 274 300 - -
Stsc211849g00002 909 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Stsc211849g00002 909 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 56 322 - -
Stsc211849g00002 909 ProSiteProfiles Leucine-rich repeat profile. 104 125 IPR001611 GO:0005515
Stsc211849g00002 909 Gene3D Transferase(Phosphotransferase) domain 1 702 907 - -
Stsc211849g00002 909 Gene3D Ribonuclease Inhibitor 24 117 IPR032675 -
Stsc211849g00002 909 Gene3D Phosphorylase Kinase; domain 1 585 698 - -
Stsc211849g00002 909 ProSiteProfiles Leucine-rich repeat profile. 300 322 IPR001611 GO:0005515
Stsc211849g00002 909 Gene3D Ribonuclease Inhibitor 221 319 IPR032675 -
Stsc211849g00002 909 Pfam Leucine Rich repeat 101 116 IPR001611 GO:0005515
Stsc211849g00002 909 Pfam Leucine Rich repeat 341 354 IPR001611 GO:0005515
Stsc211849g00002 909 Pfam Protein kinase domain 639 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211849g00002 909 Pfam Leucine rich repeat 402 462 IPR001611 GO:0005515
Stsc211849g00002 909 Pfam Leucine rich repeat 253 311 IPR001611 GO:0005515
Stsc211849g00002 909 Gene3D Ribonuclease Inhibitor 320 542 IPR032675 -
Stsc211849g00002 909 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 323 548 - -
Stsc211849g00002 909 Pfam Leucine Rich Repeat 131 149 IPR001611 GO:0005515
Stsc211849g00002 909 SUPERFAMILY L domain-like 318 534 - -
Stsc211849g00002 909 SUPERFAMILY L domain-like 28 317 - -
Stsc211849g00002 909 ProSiteProfiles Protein kinase domain profile. 621 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211849g00002 909 Gene3D Ribonuclease Inhibitor 126 220 IPR032675 -
Stsc211849g00002 909 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 27 894 - -
Stsc211849g00002 909 PRINTS Leucine-rich repeat signature 298 311 - -
Stsc211849g00002 909 PRINTS Leucine-rich repeat signature 105 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211849g00002 Stsc-Chr211849 19034 22658 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211849g00002 33 896 Receptor kinase-like Gene Family AT2G25790 44.548 0.0 710
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Singleton Stsc211849g00002 Pkinase 4.5e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211849g00002 - - adu:107470770 1124.38