Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211848g00003 ATGGCTATGGAGATAGAGGCAAGTAGTAAAGCTTCAGGGAATAGTAATAACAATGGAGGAGGAGGAGGAGGAGGAGGAGTGGTTCCGGCGTTGAGTCCTCTGAGTGAGACTCTTTGGAGGGAGAAGACCGACACGGAGTTCATCGGAGACGTATCGGCCAGGCTGACGTGGAAGGATCTGACGGTTATGGTCACTATCGGCAACGGAGAGACGCAGAATGTTCTAGAAGGCTTAACCGGTTATGCTGAGCCTGGAACCTTCACCGCACTCATGGGCCCCTCAGGCTCCGGAAAATCCACTCTCCTTGACGCTCTTTCAGGTCGCCTCGCCGCCAATGCCTTCCTCTCCGGCACCATCCTCCTCAACGGTCGCAAAGCCAAGCTCTCTTTTGGCACTGCCGCATACGTGACACAAGATGACAACTTAATTGGGACTCTAACGGTGAGAGAGACGATATTATACTCGGCGAGGTTGAGGCTGCCGGATAAGATGGCGAGGTCGGATAAGAGGGCGCTGGTGGACAGCACTATTGTGGCGATGGGGCTTCAAGATTGTGCTGACACAGTGATAGGGAACTGGCACCTTCGTGGGATTAGTGGTGGGGAGAAGAGAAGGGTTAGCATTGCTTTGGAAATATTGATGAGGCCTCGCTTGCTCTTCCTTGATGAGCCTACTAGTGGCTTAGACAGTGCTTCAGCTTTCTTTGTGACTCAAACACTGCGTGCATTGGCAAGAGATGGAAGAACAGTGATAGCTTCCATTCATCAACCTAGCAGTGAAGTTTTTGAACTCTTTGATCGATTGTACTTGCTCTCTGGTGGCAAAACTGTTTACTTTGGCCAAGCTTCTGAGGCATATGAGTTCTTTGCACAAGCTGGTTTTCCCTGCCCTGCTTTGAGGAATCCATCTGATCATTTCCTCAGATGCATCAACTCTGACTTTGACAAAGTCAAATCAACTCTTAAGGGTTCCATGAAACTCAGGTTTGAGGGAAGTGATGATCCCTTGGATAAGATCACTACTACTGAAGCTATCAGAACTCTTATTGATTACTACCGCACTTCTCAGCATTCTTATGCTGCAATACAAAAAGTGGATGAAATATCCAAAGTTAAGGGAACAGTGCTTGATGCAGGAGGAAGCCAGGCTAGCTTCTTAATGCAGTCTTACACACTAACAAAGCGCTCCTTCATCAACATGTCTAGGGACTTTGGTTACTATTGGCTTAGGCTTGTGATCTACATTTTGGTCACTATCTGCATTGGAACCATTTACTTGAACGTGGGAACAGGCTACAATTCAATTCTGGCCAGAGGCTCATGTGCATCATTTGTGTTTGGTTTTGTCACATTCATGTCAATTGGTGGATTCCCTTCTTTTGTTGAAGACATGAAGGTTTTCCAAAGGGAAAGACTGAATGGGCACTATGGTGTGACTGCATTTGTGATAAGCAACACACTATCTGCAATGCCATTCCTGATACTAATCACTTTTCTGTCTGGAACAATCTGTTACTTCATGGTTAGGCTTCACCCTGGGTTTTGGCATTACCTCTTCTTTGTGCTATGCCTTTATGCAAGTGTCACTGTTGTTGAGAGCTTAATGATGGCAATAGCTAGCATTGTCCCTAACTTCCTCATGGGCATCATAATTGGAGCAGGGATTCAGGGCATATTCATGCTGGTGTCTGGCTACTTTAGGCTCCCACATGATATTCCGAAGCCAGTCTGGCGCTATCCGATGTCCTACATCAGTTTCCACTTTTGGGCACTACAAGGACAATACCAGAATGATCTTGTAGGCTTGATATTCGACAACCAGTTGCCTGATCTTCCAAAGATACCGGGTGAATACGTCCTGGAGAATGTTTTCCAGATTGATGTGAACAGATCAAAGTGGACAGACTTAAGTGTGATCTTCAGCATGATTATAATCTACCGCATAATTTTCTTCATAATGATCAAGATCAATGAGGATGTAACACCATGGGTTAGAGGGTACATAGCTAGGAGAAGGATGCAGCAGAAGAGTGGAACTCAGAACACAACCATTGCACCTGATGTTCTCACTCAGTCACCCTCTCTTAGAGCCTATGTTTCTACTCAAAGAAGAAATGGCACTTCCAATAGTTAA 2133 0.4594 MAMEIEASSKASGNSNNNGGGGGGGGVVPALSPLSETLWREKTDTEFIGDVSARLTWKDLTVMVTIGNGETQNVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSGRLAANAFLSGTILLNGRKAKLSFGTAAYVTQDDNLIGTLTVRETILYSARLRLPDKMARSDKRALVDSTIVAMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALARDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASEAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKSTLKGSMKLRFEGSDDPLDKITTTEAIRTLIDYYRTSQHSYAAIQKVDEISKVKGTVLDAGGSQASFLMQSYTLTKRSFINMSRDFGYYWLRLVIYILVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVISNTLSAMPFLILITFLSGTICYFMVRLHPGFWHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLVGLIFDNQLPDLPKIPGEYVLENVFQIDVNRSKWTDLSVIFSMIIIYRIIFFIMIKINEDVTPWVRGYIARRRMQQKSGTQNTTIAPDVLTQSPSLRAYVSTQRRNGTSNS 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211848g00003 710 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 45 676 - -
Stsc211848g00003 710 FunFam ABC transporter G family member 11 49 292 - -
Stsc211848g00003 710 MobiDBLite consensus disorder prediction 1 27 - -
Stsc211848g00003 710 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 292 IPR027417 -
Stsc211848g00003 710 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 55 298 IPR003439 GO:0005524
Stsc211848g00003 710 SMART AAA_5 84 274 IPR003593 GO:0016887
Stsc211848g00003 710 Pfam ABC-2 type transporter 388 594 IPR013525 GO:0016020|GO:0140359
Stsc211848g00003 710 CDD ABCG_EPDR 52 280 - -
Stsc211848g00003 710 ProSitePatterns ABC transporters family signature. 198 212 IPR017871 GO:0005524|GO:0016887
Stsc211848g00003 710 Gene3D - 48 293 IPR027417 -
Stsc211848g00003 710 Pfam ABC transporter 77 226 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211848g00003 Stsc-Chr211848 28658 33455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211848g00003 85 286 Calmodulin-binding Proteins AT2G36910 31.925 7.68e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211848g00003 K05681 - gmx:100816389 1246.11