Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211848g00001 ATGGTTTCACTGGCAACCTCTACAAAGCTCTCTGTAACAAAGGAATCCATACCTTTTTTGATGATGGCAAGCTTCAAAGTGGAGAGGAAATCACACCTTCACTTCTCACCGCAATTCAAGAGTCTAGGATCGCCATCACTGTGCTCTCCCCTGACTTCGCTTGCCAACATCCTTGACTGCATCAAGGGCAATAATCGGTTGGTTTTGCCAGTTTTCTATGAGGTGGATCCTTCTGATGTGCGCCATCAAAGAAAAAGTTTCGGAGAAGCAATGGCTAAGCATGAGGAGAGATTCAAGGATGACTTGAGCAAATTGGAAAAGTGGAAGGAGGGTTTGAATCAAGTAGCTAATTTGTCAGGCTATCATTTCAAACAAGGGGACCAGTACGAACACAAGTTTATTGAAAATATCTTGAAACGGATTTCAAAAAAGATTAAGCGTGTACCTTTGCCTGTTGCTGATTATCCTGTTGGACTAGAGTCTCGAGTGTCAAAAGTAATTCCACTTTTGGAAATGGATTCTACTGATCGAGTCCACATGGTGGGGATACATGGAATTGGTGGAATAGGTAAAACAACTCTTGCTCTAGCAATTTATAACTCAATTGCTGATCATTTTGATGATCTGTGCTTCCTTGCCGGCATGAGAGAAAATTCAAATAAATATGGGTTGACACATCTTCAAAATATCCTTCTCTCTGAGATATTAGGAGATGAGGAAGTTAAGGTAGCTAGTGTTCAACAGGGAACTTCACAAATCCAACAAAAGTTTCGTGCAAAGAAAGTTCTTTTGATTTTAGATGACGTTGATGATCACAAGCAGCTACAGGCTATTGCTGGAAAACTTGATTGGTTTGGTCCTGGTAGCAGAGTTATTATTACAACACGGGACATACAATTGCTAAAACGTCATGGTGTTGAAAAGATGCATGAGGTAAAGAGGTTAAATGAGGCAGAGTCTTCTCAGTTGCTTATTAAAAAAGCTTTTAAAAATGGTGAGGTTAGACCAAGTTATGCAGGTGTTTTAAATCGTGCAATAACTTATGCCTCTGGACATCCATTTGCTCTGGAAATAGTAGGCTCCAATTTGTTTGGAAAAGAAGTAGAAGATTGGGAATCTGCATTGCAACAGTATGAAAGAATTCCTAATGGGAAGATCCAACAAATACTTAAAATAAGTTATGATGCTTTGGAGGCAAATGAGCAGAACATATTTCTTGATATCACTTGTTGCTTTAAAGGATATAAGTTGACAGAAATTGAAGATATACTTGATGCTCATTATGGTGGAAAAATGAGATATCATATTCGACGGTTGGTTGATAAATCTCTCATAAAGATTAATAAGATATGGCATCAAGTGACATTTCATGATTTGATAGAGGACATGGGAAAAGAAATTGTTCGACAAGAATCACCGAAAGTGGTAGGAAAGCGTAGTAGGTTATGGTGTTATGAAGATATAGTTCAAGTTTTGGAAGAAAACCAAGTGAGTAAGATTGATTTTGATAATTTTAGTTCTCCATATTTAAATTTGAATTTTAGATTTCTCACAAATCATGATAATTTAATTATCTATATTCCATTTTTTAATATGACAATCTTTCTCTCTATGATTCATAAATCTTTTTGA 1632 0.3676 MVSLATSTKLSVTKESIPFLMMASFKVERKSHLHFSPQFKSLGSPSLCSPLTSLANILDCIKGNNRLVLPVFYEVDPSDVRHQRKSFGEAMAKHEERFKDDLSKLEKWKEGLNQVANLSGYHFKQGDQYEHKFIENILKRISKKIKRVPLPVADYPVGLESRVSKVIPLLEMDSTDRVHMVGIHGIGGIGKTTLALAIYNSIADHFDDLCFLAGMRENSNKYGLTHLQNILLSEILGDEEVKVASVQQGTSQIQQKFRAKKVLLILDDVDDHKQLQAIAGKLDWFGPGSRVIITTRDIQLLKRHGVEKMHEVKRLNEAESSQLLIKKAFKNGEVRPSYAGVLNRAITYASGHPFALEIVGSNLFGKEVEDWESALQQYERIPNGKIQQILKISYDALEANEQNIFLDITCCFKGYKLTEIEDILDAHYGGKMRYHIRRLVDKSLIKINKIWHQVTFHDLIEDMGKEIVRQESPKVVGKRSRLWCYEDIVQVLEENQVSKIDFDNFSSPYLNLNFRFLTNHDNLIIYIPFFNMTIFLSMIHKSF 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211848g00001 543 Gene3D - 145 312 IPR027417 -
Stsc211848g00001 543 SUPERFAMILY Toll/Interleukin receptor TIR domain 54 121 IPR035897 -
Stsc211848g00001 543 PRINTS Disease resistance protein signature 180 195 - -
Stsc211848g00001 543 PRINTS Disease resistance protein signature 349 363 - -
Stsc211848g00001 543 PRINTS Disease resistance protein signature 256 270 - -
Stsc211848g00001 543 Gene3D - 35 144 IPR035897 -
Stsc211848g00001 543 SMART AAA_5 177 304 IPR003593 GO:0016887
Stsc211848g00001 543 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 45 520 IPR044974 GO:0006952
Stsc211848g00001 543 Pfam NB-ARC domain 161 397 IPR002182 GO:0043531
Stsc211848g00001 543 ProSiteProfiles TIR domain profile. 1 145 IPR000157 GO:0007165
Stsc211848g00001 543 Pfam TIR domain 51 146 IPR000157 GO:0007165
Stsc211848g00001 543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 408 IPR027417 -
Stsc211848g00001 543 Gene3D - 314 398 IPR042197 -
Stsc211848g00001 543 SUPERFAMILY "Winged helix" DNA-binding domain 385 493 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211848g00001 Stsc-Chr211848 1138 3059 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211848g00001 157 508 WRKY Transcription Factor Family AT5G45050 32.123 1.59e-45 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211848g00001 - - aip:110272157 647.121