Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211846g00004 ATGAGAGGAGATGAGGTGTTGCTTGTAACAGAAAATAAGGTTATCCAAACCCACGTAAGCCTTTGCCCCCAAACTCAACCCTCCTTCCTTATCCCCTCCGTCACAGATATACAAGAACAACAAGATGGAGGGGTGCGCTGCTCTTCCTATGGCCTAACATCGATTAAAGCCTTCTACTTTTCGCGATTCTCGCACAAACTCATGGGTCTCTGGTGTTGCTCCCTCTCCAAATTCATATTATGCGCCATTTCTGGAGCTCTCACGCTCTGTTTTGCCATAGCTGGAGCCCTTACCGGAGCTATAGCGGGTGCTTTAGCTGCTAAGGCTACTCACAGTGGTTTTCTACGGGGAGCTTCATTGGGTGCTGTTGCTGGGGCCATACTCTCAGTGGAAATCTTGGAAGCTTCCCGTGCATATTGGTGCATGGAGCAAACTGGCTCGCGCGGCACGTCATCTATGGCAGATTTCATAGAGGAACTTATTCGTGCTAGGCTTGTAGAGGAATCAATTTCACCTGCTATTTTAACTGCTTACAATTTGCAGTTTGAACACGTTGCCCATGGTAATAGAGGCTACGATGAGATTCGCGATGTTAATAATGTAGTAGCATCCAGAGGAATGACAAAGGACTCATTGAACAAGTTACCAAAACATGTCATATTGAAGGACATGAAGGCAGAGGATACCTGCTGTGCAATATGTTTACAGGACATTGTTGTAGGAGAAACTGCGAGAAGCTTACCGCGATGTCGTCATACATTTCACTTGACATGTGTGGACAGATGGCTAGTCAAGAATCACTCTTGTCCGGTTTGCAGACGAACTGTGTATAAATTTTGA 840 0.4595 MRGDEVLLVTENKVIQTHVSLCPQTQPSFLIPSVTDIQEQQDGGVRCSSYGLTSIKAFYFSRFSHKLMGLWCCSLSKFILCAISGALTLCFAIAGALTGAIAGALAAKATHSGFLRGASLGAVAGAILSVEILEASRAYWCMEQTGSRGTSSMADFIEELIRARLVEESISPAILTAYNLQFEHVAHGNRGYDEIRDVNNVVASRGMTKDSLNKLPKHVILKDMKAEDTCCAICLQDIVVGETARSLPRCRHTFHLTCVDRWLVKNHSCPVCRRTVYKF 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211846g00004 279 Pfam Ring finger domain 231 273 IPR001841 -
Stsc211846g00004 279 SUPERFAMILY RING/U-box 211 278 - -
Stsc211846g00004 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 277 IPR013083 -
Stsc211846g00004 279 ProSiteProfiles Zinc finger RING-type profile. 231 273 IPR001841 -
Stsc211846g00004 279 SMART ring_2 231 272 IPR001841 -
Stsc211846g00004 279 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 67 275 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211846g00004 Stsc-Chr211846 26330 29763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211846g00004 74 276 C3H Transcription Factor Family AT1G74410 52.451 3.34e-64 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211846g00004 - - gmx:100800105 311.997