Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211846g00001 ATGGAAAAAGTGGGATCATTAGTATGCAAGGAAGAAGAGCAGATGGATTTGCCTCCGGGTTTCCGGTTCCACCCAACTGATGAAGAGCTTATAAGCCATTACCTCTACAAGAAAGTCATTGATACCAACTTCACCGCAAGAGCCATTGGCCAAGTCGACCTCAACCGCTCCGAGCCTTGGGATTTGCCATGGAAAGCCAAAATGGGGGAAAAGGAGTGGTACTTCTTCTGTGTGCGGGACAGGAAGTATCCGACCGGGTTGCGGACGAACCGGGCCACGGAGTCCGGGTACTGGAAGGCAACCGGAAAAGATAAGGAAATTTTCAGAGGGAAATCGCTCGTCGGAATGAAGAAAACGCTGGTGTTCTACAAAGGAAGAGCACCAAAAGGAGAGAAAACTAATTGGGTCATGCACGAGTACAGGCTCGAGGGTAAATTCTCCGTCCATAACCTCCCAAAAACCGCTAAGAACGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGTTCAGCTGGGAAGAAGGTTCATATCTCCGGAATCATGAGGCTGGAAAGTTTCCGAACCGAATTCGGTTCTTCCGGTGGGGGTCTGCCTCCCTTGACGGACATCTCGCCCTCTTTCGACACGCCCAAGGCGATCCACCAAGAATCGCCTTACGTGCCCTGCTTCTCCAATCCAATTGATGTTCCAAGAAACCAAGGCGGAGGCGCAGGAGGAGAAGGAGTAGGAGGAGGAGTGTTTGGTTCGTTCCCTAACAACTCCTCTTCCTGTTCTGCTTCGCCTTCTGTCTCCGTCTACGGCGTTTCTTGGAACGCAATAGACATTCTTCCAAGGATGCCGGCTTGCGGCGGTTCCTTGTACTCTACTCAACATCATAATCATAATCATAATCAACAACAAGGTTGTGTCCAGGATGAGAGTATTCTGAGGGCGTTGTATGAATCAAACGAAAGAGAAATGATGAGTGTGTCACAGGAAACAGGCCTCACTACTGAGATGAATGTGGAAACCAATTCCGTGGTGTCCAATTTTGATTTAGGGAGGACTCGCTTTGAGACTTTGTGGAATTACTGA 1071 0.4921 MEKVGSLVCKEEEQMDLPPGFRFHPTDEELISHYLYKKVIDTNFTARAIGQVDLNRSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATESGYWKATGKDKEIFRGKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSVHNLPKTAKNEWVICRVFQKSSAGKKVHISGIMRLESFRTEFGSSGGGLPPLTDISPSFDTPKAIHQESPYVPCFSNPIDVPRNQGGGAGGEGVGGGVFGSFPNNSSSCSASPSVSVYGVSWNAIDILPRMPACGGSLYSTQHHNHNHNQQQGCVQDESILRALYESNEREMMSVSQETGLTTEMNVETNSVVSNFDLGRTRFETLWNY 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211846g00001 356 ProSiteProfiles NAC domain profile. 17 167 IPR003441 GO:0003677|GO:0006355
Stsc211846g00001 356 Gene3D NAC domain 26 171 IPR036093 GO:0003677|GO:0006355
Stsc211846g00001 356 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 301 - -
Stsc211846g00001 356 SUPERFAMILY NAC domain 13 167 IPR036093 GO:0003677|GO:0006355
Stsc211846g00001 356 FunFam NAC domain-containing protein 100-like 26 171 - -
Stsc211846g00001 356 Pfam No apical meristem (NAM) protein 18 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211846g00001 Stsc-Chr211846 6571 8243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211846g00001 15 351 NAC Transcription Factor Family AT5G07680 57.059 1.89e-127 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc211846g00001 NAM 3.2e-39 No_clan