Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211836g00003 ATGACGAAAGGGAGGATCAGGGCAAGGATCCGCAGGAGCCATCTTTACACATTTGGTTGCATTCGGCCATCGACCACTGAGGAGGGTGGGCCAAATCCACTCCAGCTCCATGGTCCTGGGTATTCCCGAACTGTGTATTGCAACCAGCCACTAATCCATGAGAAGAAATCCCTATTTTACTGCAAGAATAACATATCAACCACCAAGTACAATGTCCTCACGTTCTTGCCTAAGGCACTCTTCGAGCAATTCAGAAGGGTGGCTAACATATACTTCCTTTTGGCTGCTTGCCTCTCAGCCTCTCCAATTTCACCTTTCAGCCCTCTGAGTATGATTGCTCCTCTGGCATTTGTTGTCGGCCTTAGTATGGCGAAGGAAGCATTGGAGGATTCCCGAAGGTTCCTTCAGGATGTCAAGGTTAATAACCGGAAAGTTAGTGTCCATAAAAGTAATGGTGAGTTTGTCCCCAAGTCTTGGCAGAGAGTTATGGTTGGAGATGTTGTAAGAGTAGAGAAGGACCAATTTTTCCCAGCAGACTTGCTTCTACTTTCATCAAGTTATGAGGATGGGATATGTTATGTCGAAACAATGAATTTGGATGGTGAGACCAACTTGAAGGTTTATCCTCTTGATCCTAGTCAAATTCTCCTTCGTGATTCAAAGCTTAGGAATACTGATTATGTCTATGGTGTGGTCATTTTCACCGGTCATGATAGCAAAGTCATGCAGAATTCTACAAAATCCCCTTCAAAAAGGAGCACAATAGAAAAAAAGATGGATCATATAATATACACTCTCTTCACCGTCCTCATATTGATTTCATTTATTAGTTCAATAGGATTTGTAGTGAAGACCAGGTTCCAAGTCCCAAAGTGGTGGTATCTCCGGCCAGATAACATTGAATACCAGTATGATCCTAAGAAGATTATGTTGGCTGGGATGAGCCATCTGATTACTGCACTCATTCTTTATGGATATCTGATACCGATCTCGCTTTATGTTTCAATTGAGATTGTGAAGGTGTTACAAGCATCCTTCATTAACCAAGACATTCAAATGTATGATGAAGAAACTGGTACTCCAGCTGATGCACGGACATCAAATTTAAATGAAGAATTGGGTCAGGTAGACACTATCCTCTCTGATAAGACTGGAACTTTAACCTGCAATCAAATGGACTTTTTGAAGTGCTCCATTGCTGGTACTTCTTATGGTGTGCGCTCCAGTGAAGTTGAACTTGCTGCTGCAAAGCAGATGGCTTCTGATATGGAGGAGCAGGATATGGGATCAGATCTCTCTAATTTTCCCTTGATTAAGGGTAGCGTTCCACAGGAAAATGTTAGAAGAGCAGGAGAAATTGAATTGGAGACTGTTATAACTTCCAAAGGAGATGCGGATAAAAGGCCTGCAATAAAGGGATTTGGTTTTGAAGACAGCCGACTCATGAATGGTAACTGGTTGAAAGATCGCAATGTAGATGTCATTCTATTGTTTTTCCGGATATTATCAGTTTGCCATACTGCCATTCCTGAGGTGAATGAGGAGACTGGCGTTTGTACATATGAAGCTGAGTCACCCGATGAAGGGGCTTTTCTTGTAGCAGCAAGAGAATTTGGTTTCGAGTTTTGTAGAAGAACTCAATCAACTGTTGTTGTACGTGAAAAGTTTTCTGCCTCAGGAGAAGTGGTTGAAAGGGAGTATAGAATATTGAATCTGCTAGATTTTACTAGCAAAAGAAAGCGAATGTCCGTGATTGTTCGCGATGAGGAGGGAAACATTATTCTTTTTTGCAAAGGAGCAGACAGTATTATATTTGATCGATTGTCAGAGAATGGAAAAATGTATTTGGAGGCTACTACTAGGCATCTTAACGAATATGGAGAAAATGGTCTGAGAACACTTGCCCTTGCTTACAAAAGGCTTAATGAGCAAGAGTACACTGAGTGGAACAATGAGTTTCAGAAAGCCAGGACTTCTGTTGGGACTGACAGAGAGGCAATGCTTGAGGAGGTATCAGATCTTATGGAAAGAGAGTTGATTCTTGTTGGCGCAACTGCTGTGGAAGACAAACTACAGAAAGGGGTGCCTCAGTGTATTGATAAACTTGCTCAAGCTGGTCTCAAGATCTGGGTATTGACAGGAGATAAGATGGAAACTGCAATCAACATTGGTTTTGCTTGTAGTTTGCTTCGACAGGGCATGAAGCAAATCTGTATTACTCTAGATTCAAATGCAGTAACCAATGATCGCCTAGAGGTGGTCAAGGGCAACATCTTGAATCAAATTACCAATGCCTCACAAATGATAAAAATGGAGAAGGATCCACATGCCGCATTTGCATTAATTATTGATGGGAAAACTCTAACATATGCTTTAGAAGATGACATGAAGCACCAGTTTTTGGGATTAGCTGTTGATTGTGCATCCGTCATTTGCTGTCGTGTGTCTCCCAAGCAAAAGGCGTTGGTGACAAGATTAGTGAAAGAAGGAACTGGAAAGACCACCCTAGCAATAGGCGATGGTGCCAATGATGTTGGTATGATTCAAGAAGCAGATATTGGTGTGGGAATCAGTGGGGTTGAAGGTATGCAGGCTGTTATGGCTAGTGACTTTGCTATTGCTCAATTTCGGTTCTTGGAGCGGCTTCTGGTTATCCATGGACACTGGTGTTACAAGAGAATTGCACAAATGATATGCTATTTCTTCTACAAAAATATAGCATTTGGCCTCACCATATTCTATTTTGAGGCCTTTGCGGGATTCTCTGGTCAATCGGTTTATGATGACTGGTACATGATATTGTTCAATGTTGTTCTAACATCATTGCCTGTCATCTCACTTGGAGTTTTTGAACAAGATGTTCCATCAGAAGTTTGCCTACAGTTCCCTGCACTATATCAACAAGGACCCAGAAATTTATTCTTTGACTGGTATAGAATATTGGGATGGATGGGCAATGGTCTCTATTCATCACTCATTATTTTCTTTCTTGTTATAATCATCTTCTATGATCAAGCATTCCGGATAAATGGCCAAACGGCGGATATGGCTGCCGTCGGTACTACAATGTTCACTTGCATCATTTGCGCCGTGAACTGCCAGATTGCACTGACAATGAGCCATTTCACATGGATCCAACACCTCTTTGTGTGGGGTAGCATAGGAACGTGGTACCTCTTTCTCTTGATATATGGCGTGCTTCCTCCGAAATATTCCAAGACTGCCTACCAGATATTGATTGAAGTTCTTGCTCCAGCTCCTATTTATTGGACAGCAACAGTTTTGGTAACAATTGCATGCGTTCTTCCTTATCTCGCCCACATATCCTTCCAAAGGTGTTTTAATCCCATGGATCATCACATCATCCAAGAAATCAAGTACTACAAGAAGGACATTGAAGATCAACACATGTGGACGAGGGAGAGCTCTAAGGCGAGACAAGAAACGAAGATCGGATTCACAGCAAGAGTGGAAGCTAAGATTAGGCATTTGAAAGGGAGGCTGCAGAAGAAGCAATCTGCATTGGTGGGGGTTTCGTCTCCAACTTATACATAG 3555 0.4205 MTKGRIRARIRRSHLYTFGCIRPSTTEEGGPNPLQLHGPGYSRTVYCNQPLIHEKKSLFYCKNNISTTKYNVLTFLPKALFEQFRRVANIYFLLAACLSASPISPFSPLSMIAPLAFVVGLSMAKEALEDSRRFLQDVKVNNRKVSVHKSNGEFVPKSWQRVMVGDVVRVEKDQFFPADLLLLSSSYEDGICYVETMNLDGETNLKVYPLDPSQILLRDSKLRNTDYVYGVVIFTGHDSKVMQNSTKSPSKRSTIEKKMDHIIYTLFTVLILISFISSIGFVVKTRFQVPKWWYLRPDNIEYQYDPKKIMLAGMSHLITALILYGYLIPISLYVSIEIVKVLQASFINQDIQMYDEETGTPADARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTSYGVRSSEVELAAAKQMASDMEEQDMGSDLSNFPLIKGSVPQENVRRAGEIELETVITSKGDADKRPAIKGFGFEDSRLMNGNWLKDRNVDVILLFFRILSVCHTAIPEVNEETGVCTYEAESPDEGAFLVAAREFGFEFCRRTQSTVVVREKFSASGEVVEREYRILNLLDFTSKRKRMSVIVRDEEGNIILFCKGADSIIFDRLSENGKMYLEATTRHLNEYGENGLRTLALAYKRLNEQEYTEWNNEFQKARTSVGTDREAMLEEVSDLMERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKQICITLDSNAVTNDRLEVVKGNILNQITNASQMIKMEKDPHAAFALIIDGKTLTYALEDDMKHQFLGLAVDCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFAIAQFRFLERLLVIHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFAGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPRNLFFDWYRILGWMGNGLYSSLIIFFLVIIIFYDQAFRINGQTADMAAVGTTMFTCIICAVNCQIALTMSHFTWIQHLFVWGSIGTWYLFLLIYGVLPPKYSKTAYQILIEVLAPAPIYWTATVLVTIACVLPYLAHISFQRCFNPMDHHIIQEIKYYKKDIEDQHMWTRESSKARQETKIGFTARVEAKIRHLKGRLQKKQSALVGVSSPTYT 1184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211836g00003 1184 SUPERFAMILY Calcium ATPase, transmembrane domain M 59 1112 IPR023298 -
Stsc211836g00003 1184 SFLD C1.7: P-type atpase like 363 889 - -
Stsc211836g00003 1184 Pfam Phospholipid-translocating ATPase N-terminal 45 112 IPR032631 -
Stsc211836g00003 1184 SUPERFAMILY Calcium ATPase, transduction domain A 148 244 IPR008250 -
Stsc211836g00003 1184 FunFam Phospholipid-transporting ATPase 549 680 - -
Stsc211836g00003 1184 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 481 645 IPR023299 GO:0000166
Stsc211836g00003 1184 Gene3D - 377 389 IPR023214 -
Stsc211836g00003 1184 CDD P-type_ATPase_APLT_Dnf-like 63 991 - -
Stsc211836g00003 1184 Gene3D - 390 413 IPR023299 GO:0000166
Stsc211836g00003 1184 Pfam Cation transport ATPase (P-type) 505 608 - -
Stsc211836g00003 1184 Coils Coil 406 426 - -
Stsc211836g00003 1184 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 39 207 - -
Stsc211836g00003 1184 Gene3D - 114 246 - -
Stsc211836g00003 1184 Gene3D - 678 878 IPR023214 -
Stsc211836g00003 1184 Gene3D - 532 657 IPR023299 GO:0000166
Stsc211836g00003 1184 NCBIfam HAD-IC family P-type ATPase 111 275 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211836g00003 1184 NCBIfam HAD-IC family P-type ATPase 810 919 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211836g00003 1184 FunFam Phospholipid-transporting ATPase 682 878 - -
Stsc211836g00003 1184 SUPERFAMILY HAD-like 368 882 IPR036412 -
Stsc211836g00003 1184 Pfam Phospholipid-translocating P-type ATPase C-terminal 866 1116 IPR032630 -
Stsc211836g00003 1184 NCBIfam phospholipid-translocating P-type ATPase 208 1124 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Stsc211836g00003 1184 PRINTS P-type cation-transporting ATPase superfamily signature 838 857 - -
Stsc211836g00003 1184 PRINTS P-type cation-transporting ATPase superfamily signature 380 394 - -
Stsc211836g00003 1184 SFLD p-type atpase 363 889 IPR044492 -
Stsc211836g00003 1184 ProSitePatterns E1-E2 ATPases phosphorylation site. 382 388 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211836g00003 Stsc-Chr211836 13255 18832 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211836g00003 1 1180 Primary Pumps ATPases AT1G17500 71.347 0.0 1830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211836g00003 K01530 - gmx:100778710 2056.95