Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211836g00002 ATGGAGCCTCGAATTGCCAACAAGTTCCGTCTTGGTCGCAAGCTCGGTAGCGGATCATTCGGGGAGATCTATCTCGGGACTAACGTTCAGACTAATGAAGAGGTTGCAATTAAGCTTGAAAATATCAAAACCAAGCATCCTCAGCTGTTGTATGAGTCAAAGCTGTACAGAATACTACAAGGAGGAACTGGAATCCCAAATTTGAAATGGTTCGGTGTTGAGGGAGAATACAATGTCCTTGTTATAGACTTACTGGGCCCAAGCCTCGAGGATTTATTCAATTTCTGCAGTCGGAAATTGTCCTTGAAAACTGTTCTCATGCTTGCTGATCAGATGATAAATCGGGTTGAATTTATTCATTCCAAATCATTTTTACATAGGGACATCAAGCCAGACAACTTCCTCATGGGTTTAGGGAGGCGTGCAAATCAAGTGTATGCCATTGACTTCGGTCTTGCTAAGAAATACAGAGACAGCGCCACCCATCAGCATATTCCATATAGAGAGAATAAGAATTTGACTGGAACTGCAAGATATGCTAGCATGAATACTCATCTTGGAATTGGATTCCAGTTTGATTATGTCTTTGATTGGACCATCTTGAAATATCAGCAATCTCAAATTGCCACTCCTCCCATACGTCCTGTTGGTCTTCCTCCTGGGCCAAGTTCTGGCATGCCACCAACTGCTTTGAATGCTGATAGGCAGTCAGGTGGAGAAGATGGTAGGCATACTGGTTTGTCTTCATCAGATCTTACTCGTAGAAGGAATTCTGGACCTATTGCAAATGATGGAAACTTAGCTAGACAAAAGGCCCCCGTTACAAATGACACTGCAAGATCTAAAGATGGGATGTTGTCTAGCTCTAATTTCTTTCGGTCAAGTGGATCTACAAGGAGAGCTGCTTTCTCAGGCGGTCGTGAAGCAGTTGGCAGTGGTACCGAACAATCTCGTTCTCAGACCTTGGATGCAAGTCCAGTAGCACTCCGGAAAATATCTGATGCCCAGAAAAATTCACCTGTCATCTCTTCTGAGCAGAACCGGGCATCTTCTGGCATAACCACATCAAACATAAGGAATTTTGAGTCAACTCTTAGAGGATTTGAGAATTTGAATCTCAATGAGGAGAGGGTAAAGTAG 1140 0.4333 MEPRIANKFRLGRKLGSGSFGEIYLGTNVQTNEEVAIKLENIKTKHPQLLYESKLYRILQGGTGIPNLKWFGVEGEYNVLVIDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDSATHQHIPYRENKNLTGTARYASMNTHLGIGFQFDYVFDWTILKYQQSQIATPPIRPVGLPPGPSSGMPPTALNADRQSGGEDGRHTGLSSSDLTRRRNSGPIANDGNLARQKAPVTNDTARSKDGMLSSSNFFRSSGSTRRAAFSGGREAVGSGTEQSRSQTLDASPVALRKISDAQKNSPVISSEQNRASSGITTSNIRNFESTLRGFENLNLNEERVK 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211836g00002 379 MobiDBLite consensus disorder prediction 211 324 - -
Stsc211836g00002 379 PANTHER CASEIN KINASE-RELATED 13 193 - -
Stsc211836g00002 379 Pfam Protein kinase domain 10 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211836g00002 379 SUPERFAMILY Protein kinase-like (PK-like) 6 199 IPR011009 -
Stsc211836g00002 379 MobiDBLite consensus disorder prediction 242 301 - -
Stsc211836g00002 379 Gene3D Phosphorylase Kinase; domain 1 2 85 - -
Stsc211836g00002 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Stsc211836g00002 379 Gene3D Transferase(Phosphotransferase) domain 1 86 202 - -
Stsc211836g00002 379 ProSiteProfiles Protein kinase domain profile. 9 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211836g00002 379 MobiDBLite consensus disorder prediction 310 324 - -
Stsc211836g00002 379 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Stsc211836g00002 379 FunFam Putative Casein kinase I 1 85 - -
Stsc211836g00002 379 SMART serkin_6 9 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211836g00002 Stsc-Chr211836 8042 12234 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211836g00002 7 181 EF-hand Containing Proteins AT2G17890 27.473 3.65e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Stsc211836g00002 Pkinase 8.6e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211836g00002 K02218 - gmx:100785851 371.703