Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211826g00009 ATGGCTGAATCACCTGAATCAGATGAAAAGTTTCAAGCTTCAACCACCGCTATGAACGAAATGAAGAAAAAGATGAATAAGAAGAAGAAGAAGCGGCCTCGGGATTCTGAATCACAGAACCAATCAGCTGAACCTCAACAACAAGAAGAGGGCGCAGAATCCATGGAAAACAATGCGAACAAGAAGAAGAAGATAGTAGAAGAAGAAGAAAGCCAGGTTGAAGAAAAAGAAGAAGAAGATAAGAAAGAGGAGGAGAAGAAGAAGAAGAAGGGTGGTGGAATAATGAGTAACGATGAATTCTCTTCTCTAGGGTTATCAGAACCAACTTCGAAGGCAATTGGGGATATGGGGTTCAAATACATGACTCAGATACAATCAAGGGCAATTCCACATCTTCTAATTGGAAAAGATGTTCTTGGCGCTGCCAGAACCGGTTCCGGAAAAACCCTTGCTTTTTTAGTCCCTGCTGTGGAGCTTCTCTACAATGTTCAGTTCACACCTCGTAATGGTGCTGGTGTTATTGTCATTTGCCCCACCAGAGAGCTTGCAATTCAGACGCATGCTGTGGCAAAGGAACTGCTCAAGTATCATTCGCAGACTCTTGGATTGATTATTGGAGGTTCGACGAGAAAACTCGAAGCTGAACGCATTGCTAAAGGGGTGAATCTGCTCGTGGCAACGCCTGGTCGTCTTCTTGATCATCTTCAGAATACAAAGGGTTTCATATATAAGAATTTGAAGTGCCTCATGATCGATGAAGCTGACAGAATACTAGAAGCTAACTTTGAGGAAGAAATGAAACAGATTATTAAGATCCTTCCAAAGAATAGGCAAACGGCTTTATTTTCAGCTACGCAAACAAAGAAGGTTGAGGATCTTGCACGCTTGTCATTTCAGACAACTCCTATATATATTGATGTAGATGATGGGAGAACCAAGCAGACCCGCACAACTACCTTCTTTGACTTCTGCAAAGCAGAAACAGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATTCCTGCTGTGGACTGGATTGTGCAGTATGATCCACCAGATGAACCGAAGGAATATATCCACAGAGTTGGTAGAACAGCTCGCGGGGAAGGTGGAAAAGGAAATGCGTTGCTGTTCCTGATTCCTGAAGAATTACAATTTCTTCGCTATCTGAAGGCAGCTAAGGTCCCTGTGAAAGAGTATGGATATGATGAAAAGAAGGTGGCAAATGTACAATCTCACCTGGAGGATTTGGTAGCCAACAACTTTTTTTTAAACAAGATGGCTAAAGATGCGTATAGATCGTATCTATTGGCATACAATTCACATTCTATGAAGGATATATTCAATGTACACCGCCTCGATATGAAGGATGTAGCGGCTTCTTTCTGTCTCTCAAACCCACCAAATGTGACTCTGAACTTAAACAGCAGTAAGCAAAGGAATAAAATGCGCAAAGTTGATGGAAGTAGTTACAGCAACCCTCATGGAAAAAGAAATTTTCATTCTAAAAAGCAATTTGTGAGGCATTAG 1539 0.4191 MAESPESDEKFQASTTAMNEMKKKMNKKKKKRPRDSESQNQSAEPQQQEEGAESMENNANKKKKIVEEEESQVEEKEEEDKKEEEKKKKKGGGIMSNDEFSSLGLSEPTSKAIGDMGFKYMTQIQSRAIPHLLIGKDVLGAARTGSGKTLAFLVPAVELLYNVQFTPRNGAGVIVICPTRELAIQTHAVAKELLKYHSQTLGLIIGGSTRKLEAERIAKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRTKQTRTTTFFDFCKAETGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYGYDEKKVANVQSHLEDLVANNFFLNKMAKDAYRSYLLAYNSHSMKDIFNVHRLDMKDVAASFCLSNPPNVTLNLNSSKQRNKMRKVDGSSYSNPHGKRNFHSKKQFVRH 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211826g00009 512 MobiDBLite consensus disorder prediction 39 54 - -
Stsc211826g00009 512 Pfam Domain of unknown function (DUF4217) 413 473 IPR025313 -
Stsc211826g00009 512 MobiDBLite consensus disorder prediction 482 512 - -
Stsc211826g00009 512 MobiDBLite consensus disorder prediction 55 70 - -
Stsc211826g00009 512 MobiDBLite consensus disorder prediction 1 106 - -
Stsc211826g00009 512 MobiDBLite consensus disorder prediction 79 94 - -
Stsc211826g00009 512 SMART helicmild6 264 372 IPR001650 -
Stsc211826g00009 512 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 250 258 IPR000629 -
Stsc211826g00009 512 PANTHER RNA HELICASE 51 307 - -
Stsc211826g00009 512 Gene3D - 43 308 IPR027417 -
Stsc211826g00009 512 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 265 421 IPR001650 -
Stsc211826g00009 512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 306 IPR027417 -
Stsc211826g00009 512 SMART DUF4217_3 412 475 IPR025313 -
Stsc211826g00009 512 CDD DEADc_DDX18 109 306 IPR044773 GO:0003724|GO:0005524
Stsc211826g00009 512 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 98 126 IPR014014 GO:0003724
Stsc211826g00009 512 Pfam DEAD/DEAH box helicase 122 293 IPR011545 GO:0003676|GO:0005524
Stsc211826g00009 512 CDD SF2_C_DEAD 310 382 - -
Stsc211826g00009 512 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 129 304 IPR014001 -
Stsc211826g00009 512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 436 IPR027417 -
Stsc211826g00009 512 Coils Coil 52 88 - -
Stsc211826g00009 512 SMART ultradead3 117 315 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211826g00009 Stsc-Chr211826 40931 44559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211826g00009 313 390 Eukaryotic Initiation Factors Gene Family AT3G13920 33.333 7.93e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211826g00009 K13179 - gmx:100798290 624.78