Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211825g00003 ATGGGAGGTGACAGTGCCGCAGAGAGTCCTACGGATTCAAAGCTCTCCGAACCCGTCAGCATCAACATTCGCTGTTCCAATGGTTCCAAGTTCTCCGTTCAGATTCCCCTCGATTCCACCGTCGGATCCTTCAAGGAAGTTGTTTCTGGCAGCTGCGATATCCCTGCGGAACAGCAGCGCCTGATTTACAAGGGTCGGATCCTCAAGGACGATCAGACCCTACAAAGCTATGGATTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGCTTCACACCTTCCAATACAAGTGGGGGCACAAATACTAGTGGCACCAATACCGCCACGACTAATACCAGAAGTACTGGTGCTGCTGAGGGTGGGGGTTTAGGGGGGCTTGGTTTTGGAGCTTCATTATTCCCTGGATTAGGTATGAATGGGATTGGAGGCAATAATAACCCATTTGGAGAGGGATTTCCGGATCTCGAGCAGATGCAGCAACCATTTATTTCAAATCCCAATTTAATGAGAGAAATTATGAATACGCCTGCTATGCAGAACCTAATAAATAATCCTGAGATTGTGCGGAATCTTATAATGAGTAACCCACAGATGCAGGAGCTCATGGATCGGAATCCCGAGTTAGCTCACATACTTAATGATCCAAGCACCCTCCGCCAGACACTTGAAGCTACACGGAACCCTGAGATCATGCNNNNNNNNNNCGACAGAGCCATGAGCAACATTGAAGCGTCTCCTGAGGGATTTAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCTACTACGATGGGTGGAAATACAGGAGGCAACAATACACCTCTTTCTGGGACTCAAGCCAGGGACCAATCAACAAATCCCTCAACTACTAGCTCTGAAGCAACTGCTGGTTCTCCATTACCCAATACTAACCCGCTCCCCAATCCTTGGTCCTCTACTGGAACTGGTGGTGCCCAAAATAACAACAGAAGGTCAACCCCTGCTGCTGGGGATGCTAGGCAGCAGGCACCTACTGGCTTAGGAGGGCTTGGGCTGCCAGATCTTCAAGGCATGCTGGGCGGCAATGCTATGCCAGATCCTGCTATGATGGCCCAGTTAATGCAAAATCCAGCTATCTCAAATATGATGCAAAGTATCCTTTCCAACCCACAAACTTTGAATCAGATGCTTGGAGCTAATGCTGATCAGCGTGGCATGCCTGATTTGAATTCTCTTAGAGAAGTGATGCAAAATCCAGAGTTCCTTCGCATATTTTCATCACCTGAGACACTGCAGCAACTCATGTCTTTTCAGCAAGCTCTTATGTCTCAGCTTGGTCAACAACAGCAACCGCGGGAATCAGGTCAAACCGGCGGAGGTGCTTTGAACAACATGGCAGGTTTGGAGTTGTTATCAAGCATGTTCGGTGGACTGGGAACTGGTAGCCTAGCTGTTCCAAATAGATCAAACGAGCCACCGGAGCAGTTGTATGCAACCCAACTTTCTCAGCTTCAAGAGATGGGATTCTTCGACACCCAAGAGAATATAAGGGCTCTTATTGCCACATCTGGTAATGTTCATGCAGCTGTTGAACGGCTTCTGGGAAACTCTGGTCAGTAG 1614 0.4783 MGGDSAAESPTDSKLSEPVSINIRCSNGSKFSVQIPLDSTVGSFKEVVSGSCDIPAEQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFTPSNTSGGTNTSGTNTATTNTRSTGAAEGGGLGGLGFGASLFPGLGMNGIGGNNNPFGEGFPDLEQMQQPFISNPNLMREIMNTPAMQNLINNPEIVRNLIMSNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMXXXXDRAMSNIEASPEGFNMLRRMYENVQEPFLNATTMGGNTGGNNTPLSGTQARDQSTNPSTTSSEATAGSPLPNTNPLPNPWSSTGTGGAQNNNRRSTPAAGDARQQAPTGLGGLGLPDLQGMLGGNAMPDPAMMAQLMQNPAISNMMQSILSNPQTLNQMLGANADQRGMPDLNSLREVMQNPEFLRIFSSPETLQQLMSFQQALMSQLGQQQQPRESGQTGGGALNNMAGLELLSSMFGGLGTGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211825g00003 537 Gene3D - 477 537 - -
Stsc211825g00003 537 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 489 534 IPR015940 -
Stsc211825g00003 537 SMART CBM 195 234 IPR006636 -
Stsc211825g00003 537 SMART CBM 145 182 IPR006636 -
Stsc211825g00003 537 SMART CBM 341 381 IPR006636 -
Stsc211825g00003 537 SMART CBM 387 432 IPR006636 -
Stsc211825g00003 537 SMART ubq_7 19 90 IPR000626 GO:0005515
Stsc211825g00003 537 MobiDBLite consensus disorder prediction 263 361 - -
Stsc211825g00003 537 FunFam Ubiquitin domain-containing protein DSK2b 16 102 - -
Stsc211825g00003 537 MobiDBLite consensus disorder prediction 90 117 - -
Stsc211825g00003 537 SUPERFAMILY Ubiquitin-like 12 106 IPR029071 -
Stsc211825g00003 537 Gene3D - 8 103 - -
Stsc211825g00003 537 CDD Ubl_Dsk2p_like 19 91 - -
Stsc211825g00003 537 PANTHER UBIQUILIN 14 532 IPR015496 -
Stsc211825g00003 537 Pfam UBA/TS-N domain 495 531 IPR015940 -
Stsc211825g00003 537 MobiDBLite consensus disorder prediction 263 337 - -
Stsc211825g00003 537 FunFam Ubiquitin domain-containing protein DSK2b 478 536 - -
Stsc211825g00003 537 Pfam Ubiquitin family 21 88 IPR000626 GO:0005515
Stsc211825g00003 537 MobiDBLite consensus disorder prediction 90 118 - -
Stsc211825g00003 537 SUPERFAMILY UBA-like 491 533 IPR009060 GO:0005515
Stsc211825g00003 537 CDD UBA_PLICs 495 533 - -
Stsc211825g00003 537 SMART uba_6 495 533 IPR015940 -
Stsc211825g00003 537 ProSiteProfiles Ubiquitin domain profile. 19 88 IPR000626 GO:0005515
Stsc211825g00003 537 Gene3D - 190 245 - -
Stsc211825g00003 537 FunFam Ubiquilin 1 192 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211825g00003 Stsc-Chr211825 18943 23800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211825g00003 19 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 3.94e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211825g00003 K04523 - gmx:100776447 767.689