Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211824g00003 ATGTTGGAAGAAGAAGCAAAAATAAATAATAAGCCCTCGGATGGTGGCGGAGGCACGCCTACTCGAAGAGTCTATTCCCGTTCAGTTTCGTGGACGGATAGGTCTCCGAGCAGCCGGCACAAGCCACCACCACAGCCACCAAACACAAAGCCAAGGCCATTCTTGCCCCCTCTTCAGCCCCTTGCCATAAGCAAGCGCAGCGTCGAGGAATGGCCAAGCGCAGGATCCGACGACCTCGGCGTTTGGCCAATTCCTCAAACACCAAGAGCAGGAGGAGGAGGAGGAGGGTCCACAAAAGAATTTCAGTTCAAGAGAGACAAACTTGCCTTCTTTGACAAGGAATGTTCTAGAATCGCGGAGCATATATACTTAGGAAGCGACACCGTTGCCAAGAACCACGAGCTACTCAGACAAAACGGAATCACTCATGTTTTGAACTGCGTTGGTTACGTTTGTGCAGAGTATTTCAAGAGCGACTTTGTTTATAAAACCCTCTGGCTTCAGGACAGTCCTTCAGAGGACATAACAAGCATTCTCTATGACGTGTTTGATTATTTTGAAGATGTTCGAGAGCAGGGCGGCCGCGTCTACGTCCATTGCTGCCAGGGCGTATCGCGGTCGTCCTCTCTCGTCATCGCCTACCTCATGTGGAGGGAGGGACAAAGCTTTGAAGACGCTTTCCAGTATGTCAAGAATGCAAGGGGAGTCACCAATCCAAACATGGGATTTGCATGCCAACTCCTCCAGTGTCAAAAGAGGGTCCACGCTATGCCAGCAAGTCCTAATTCTATCCTAAGGATGTACCGAATGGCGCCTCATTCTCCGTACGATCCTCTTCATTTGGTGCCTAAGACGGTTGGCCAGCCGGGCGCGAAAGCTCTAGATTCTCGTGGAGCTTTTCTTGTCCATGTTCCATCTACTATCTATGTTTGGATTGGTAAGAACTGCAGCCCGGTGATTGCTTCAGACGCTAGAGGCGCCGCGCTTCAGGTAGTCCGGTATGAGAGGGCTAAGGGTCCGATTTTGAAGATCCATGAAGGTGAGGAAGTACCTCAGTTTTGGACTGCTCTGTCTTCGGGCGGGGTTGTCCCGCCTTTTTCTGTGTCTAGTGCAGGGCCGGAGACTTGCTTGCCGGCGAGCGAGCACGGATGGGGAATACTGAGGCGGAAGCTTGCTGCTGGAGTCATGAAAGAGTTGCTTAACTCTCCCAAATTAAGTACTGGTGTGAATATCAAAGACAACAAAGAAGATGAACCTTTGTCACCGTCATCAAGTCATTCCTTTGAATGCTATTTGAATGATAATAATAACAATTCAGAGGCAAAAGTAGTGGAAGAGGCTTCTGAAGCCATGGACTCATCACCGTCGTCTATTTCTGGGGTTCCTTCAAATTCCTTTCCTTGGAACAAATCGCCGACGCTTTCGCCTTCGAGTTCCGATTATGCCAGCTCGTTCACGTTTTCACCTTCCTCTGCCAATTGGTCTGATTTGTCACTTGTGTCATCTAGGCAGCCATCACCATCTGGAATGGAATCAACCACCGAAGACGCGCTTTTAGCTGAGAGTTCCTCGTTGCTTCACAAAGAAGTAACCTCAACACCAGAAATGTTTTTGCCTAATCAAAGTTTGGGAGCGGCGAGCTCCTATTTCGAGATGAAAGGATCCTCCCCGTCAATAGCAGAGCGCCGGGGGAGTAATCCGCTGCCTCGAGTGCTGCTATCGTCCATTAAGGAATCATCTCAGGTCCACAAGAACCTGGAGGATTGCATGTATTAA 1776 0.4961 MLEEEAKINNKPSDGGGGTPTRRVYSRSVSWTDRSPSSRHKPPPQPPNTKPRPFLPPLQPLAISKRSVEEWPSAGSDDLGVWPIPQTPRAGGGGGGSTKEFQFKRDKLAFFDKECSRIAEHIYLGSDTVAKNHELLRQNGITHVLNCVGYVCAEYFKSDFVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVYVHCCQGVSRSSSLVIAYLMWREGQSFEDAFQYVKNARGVTNPNMGFACQLLQCQKRVHAMPASPNSILRMYRMAPHSPYDPLHLVPKTVGQPGAKALDSRGAFLVHVPSTIYVWIGKNCSPVIASDARGAALQVVRYERAKGPILKIHEGEEVPQFWTALSSGGVVPPFSVSSAGPETCLPASEHGWGILRRKLAAGVMKELLNSPKLSTGVNIKDNKEDEPLSPSSSHSFECYLNDNNNNSEAKVVEEASEAMDSSPSSISGVPSNSFPWNKSPTLSPSSSDYASSFTFSPSSANWSDLSLVSSRQPSPSGMESTTEDALLAESSSLLHKEVTSTPEMFLPNQSLGAASSYFEMKGSSPSIAERRGSNPLPRVLLSSIKESSQVHKNLEDCMY 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211824g00003 591 ProSitePatterns Tyrosine specific protein phosphatases active site. 198 208 IPR016130 GO:0016311|GO:0016791
Stsc211824g00003 591 MobiDBLite consensus disorder prediction 23 38 - -
Stsc211824g00003 591 MobiDBLite consensus disorder prediction 494 514 - -
Stsc211824g00003 591 MobiDBLite consensus disorder prediction 444 466 - -
Stsc211824g00003 591 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 105 256 IPR029021 -
Stsc211824g00003 591 SMART dsp_5 114 253 IPR020422 GO:0006470|GO:0008138
Stsc211824g00003 591 Pfam Dual specificity phosphatase, catalytic domain 122 252 IPR000340 GO:0008138|GO:0016311
Stsc211824g00003 591 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 173 234 IPR000387 GO:0016311|GO:0016791
Stsc211824g00003 591 SMART VILL_6 266 360 IPR007122 GO:0051015
Stsc211824g00003 591 MobiDBLite consensus disorder prediction 1 58 - -
Stsc211824g00003 591 PANTHER MKPA PROTEIN 358 585 - -
Stsc211824g00003 591 SUPERFAMILY Actin depolymerizing proteins 260 362 - -
Stsc211824g00003 591 Gene3D Severin 266 362 IPR029006 -
Stsc211824g00003 591 MobiDBLite consensus disorder prediction 39 58 - -
Stsc211824g00003 591 CDD DSP 115 249 - -
Stsc211824g00003 591 Gene3D Protein tyrosine phosphatase superfamily 97 256 IPR029021 -
Stsc211824g00003 591 MobiDBLite consensus disorder prediction 406 432 - -
Stsc211824g00003 591 MobiDBLite consensus disorder prediction 450 466 - -
Stsc211824g00003 591 ProSiteProfiles Dual specificity protein phosphatase domain profile. 114 256 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211824g00003 Stsc-Chr211824 18510 21242 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211824g00003 36 149 Protein tyrosine phosphatase (PTP) family AT3G55270 50.376 2.73e-32 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211824g00003 - - lja:Lj6g3v0574850.1 732.25