Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211821g00007 ATGGCAAGTCAGGGCTCTAATGAAGGCTCCAGTTCTGGCACTACATCAGTGGACTGTTCAGATTCAACTGTTCAGCTCAACATCAAGACTCTAGATTCACGTGTCTACAATTTTCAACTGGATAAAAATATGCCTGTTTCCTTATTAAAGGAGAAAATTGCAAATGAAATTGGTCTTCCAGTTGGTCAGCAACGGCTGATATTCAGAGGAAAAGTCTTAAAGGACGAGCATGTTCTATCTGAGTATCATGTTGAGAATGGGCATACCTTGCATTTAGTGGAAAGGCAACCAAATCAGTCACAGGCTTCTGGTAATAGTACTGGTGAGCCAGCTGGTACTAATGGTAATGCAGGAAATGATGCGCCTCCTCGTAACCGTGTTGGACAAATTTCACACAGTGTAGTTCTAGGAACTTTTAATGTAGGGGACCAAGGGGAAGGCATTGTTCCTGACCTTACGCGGGTTATTGGGGCAGTTTTGAATTCTATTGGAATTGGTGGTCAGAACACAAGTAGTCCTCCCAATGCTACCCAAACTTCTACAGCTCCATCGGGGAATGAAGCTGTGGGAGTGCATTCTGGGAATCAAAATGCATCTGGAACTCAAGCACAGTCTGGCCAGACATTTCCTGGTCAGGCATTCCAATCTCTGCCTCAAGTTGTTCAGATTCCTGTGGCTTCTGGAGCCATACCCATCCCTTCTCTCAATGCTCCAATTCCTGATTCATTGAACACGCTCTCTGAATTTATAAATCGCATGGAACAGACACTATCGCAAAATGGTTATGAGTCAAATTTACCTTCAACTAATGCTGGAGATCAACGGGTTGAATTGCCTACCAACGCACAAGGGTTGCCGAATGTTGAAGCATTAAGCACCATCTTGCATCGTACAGAACAGTTGCTTAGTCATCATGCTGTTGCTGCATTATCTCATATTGCTGGACGATTGGAGCGAGAGGGAACTTCGTCTGATTTAAGTATAAGGGGTCAAATACAGTCAGAGTCAGCGCAATTAGGACTTGCTATGCAGCATTTGGGCACACTTCTACTTGAGCTTGGCCGAACAATGTTAACCTTGCGGATGGGACAGTCTCCTGCAGAATCTGCTGTAAATGCTGGACCTGCAGTTTATATTTCTCCATCCGGGCCAAATCCTGTAATGGTGCAGCCCTTTCCTCTTCAGACAAACTCACTCTTTGGTGGTCCTATTCCTTCTTCAACTTCTCCAGCATTTGGTGCCATTGGTATTGGAAGTGCTCCGCGGAATGTGAACATTCATATACATGCTGGTACTGCTCTTGCACCCATTGTTTCAGCAATTAGTTCTAGGACAAATAATGGAGAAGGGACAAGAAATGAAAACCATAATGAGCCTGGCCCTGTGGATTCTGGTTCTGCACGTGTGTTACCTGTTAGAAATTTCATCTCACCAGCCTTCCCATCACACCCTCCTGGTGTTGGAGTTGCCAGTGGCACACAGACTGGGTTAGGTGTTTCCACTTCACAGCCACCTTCTGATTCAGCAACATGGCCATCTGCTGTAAATGAAGCGAATTTCTTTAGGAACTTAGTTCGTAATATGCAAGGAGATAACATGGCTCAATCAGGTCAAATGGCATCAACTGGCCAAGACTTGTCTTCTGGTTCTGAATCAAGGCCTGCCCAGAGAGATGAGCAGCCCCAAACTGAGGCAGTGCAAACCTGTGGCAATGATGGGAGAGGTGTTTCAGTTGACAATCGTGCTTCAAGTTCTTCCGGTCAAGCTTTACAAATTTCTTCTGGTGGGGAAACAACAGCAAAATCAGAACAAGTAGAGGGCACTTCATCTGCAAGTGTAAAACAAAGTGTAGCTGAACCTGCCAGAGCTGCTCCTCTTGGATTGGGCATGGGTGGCTTGGAGCGTAAGAGGCGGACACGACTTCAGCCTCCTGTAAGTAAAGGTGCTGATGGATCATCCGATTCTTCTGTCACCCAAAGTCAGCAAACTGGAACAGAGGGTCAACACACATTGCAAACTCTTTCAAGTCATGGCTCTTCTATGAATGCAAGAAATCTTAATGGACCATCCGAGCAGCCGTTGCCCTCTGGTGATAGGCAGATCGATATGGCTGGTTTGATGTCTCAAGTTTTGCATAGCCCTGCTTTGAATGGTTTGCTTGAAGGGGTTTCACGGCAAAGTGGGGTTGACTCACCTAATGGCTTGAGGAATATGTTGCAGCAGTTCACGCAGAGTCCACAGATGATGACCACGGTCAATCAAATCGTCCAACAGGTTGGCAGTCAGGATATGGGAAATATGTTTGCTGGAATGGAAAGGGGGCAAGGGGGTGGTATTGACTTGTCAACTATGCTTCAACAGATGATGCCTATTGTATCCCGAGCCCTTGGTGGGGATACTCCTCCTCCACTATTCTCTGCTGCAGAACCTGAGACCTTGGCACCCTACAGAGATGAAAACTCCAACAATACAACTTTACAGCTCAACCTTCAAGAAGTGGTGGATAGGATTGACCACTTGAGCCCACCAACAGATGTTTTCCGTGCTGTAGCTGAAAATGCTGCCCGGGTATCTTGGGGTGGAAATGTTACCAATGATATTCTGGATGAGTTATGCAGTAATGAGAGTCTTGCCCGCGAATATTTGGAGACATTGCGATATGATGTGAGACAGCAGCTCAATGGCCATTCTGAGCAGGATAAGCCATAA 2709 0.4603 MASQGSNEGSSSGTTSVDCSDSTVQLNIKTLDSRVYNFQLDKNMPVSLLKEKIANEIGLPVGQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPNQSQASGNSTGEPAGTNGNAGNDAPPRNRVGQISHSVVLGTFNVGDQGEGIVPDLTRVIGAVLNSIGIGGQNTSSPPNATQTSTAPSGNEAVGVHSGNQNASGTQAQSGQTFPGQAFQSLPQVVQIPVASGAIPIPSLNAPIPDSLNTLSEFINRMEQTLSQNGYESNLPSTNAGDQRVELPTNAQGLPNVEALSTILHRTEQLLSHHAVAALSHIAGRLEREGTSSDLSIRGQIQSESAQLGLAMQHLGTLLLELGRTMLTLRMGQSPAESAVNAGPAVYISPSGPNPVMVQPFPLQTNSLFGGPIPSSTSPAFGAIGIGSAPRNVNIHIHAGTALAPIVSAISSRTNNGEGTRNENHNEPGPVDSGSARVLPVRNFISPAFPSHPPGVGVASGTQTGLGVSTSQPPSDSATWPSAVNEANFFRNLVRNMQGDNMAQSGQMASTGQDLSSGSESRPAQRDEQPQTEAVQTCGNDGRGVSVDNRASSSSGQALQISSGGETTAKSEQVEGTSSASVKQSVAEPARAAPLGLGMGGLERKRRTRLQPPVSKGADGSSDSSVTQSQQTGTEGQHTLQTLSSHGSSMNARNLNGPSEQPLPSGDRQIDMAGLMSQVLHSPALNGLLEGVSRQSGVDSPNGLRNMLQQFTQSPQMMTTVNQIVQQVGSQDMGNMFAGMERGQGGGIDLSTMLQQMMPIVSRALGGDTPPPLFSAAEPETLAPYRDENSNNTTLQLNLQEVVDRIDHLSPPTDVFRAVAENAARVSWGGNVTNDILDELCSNESLAREYLETLRYDVRQQLNGHSEQDKP 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211821g00007 902 MobiDBLite consensus disorder prediction 95 127 - -
Stsc211821g00007 902 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Stsc211821g00007 902 MobiDBLite consensus disorder prediction 1 20 - -
Stsc211821g00007 902 MobiDBLite consensus disorder prediction 165 210 - -
Stsc211821g00007 902 MobiDBLite consensus disorder prediction 534 699 - -
Stsc211821g00007 902 MobiDBLite consensus disorder prediction 95 120 - -
Stsc211821g00007 902 MobiDBLite consensus disorder prediction 444 460 - -
Stsc211821g00007 902 SUPERFAMILY Ubiquitin-like 17 98 IPR029071 -
Stsc211821g00007 902 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Stsc211821g00007 902 PRINTS Ubiquitin signature 55 75 IPR019956 -
Stsc211821g00007 902 PRINTS Ubiquitin signature 76 97 IPR019956 -
Stsc211821g00007 902 MobiDBLite consensus disorder prediction 534 616 - -
Stsc211821g00007 902 MobiDBLite consensus disorder prediction 646 694 - -
Stsc211821g00007 902 SMART ubq_7 24 95 IPR000626 GO:0005515
Stsc211821g00007 902 MobiDBLite consensus disorder prediction 444 467 - -
Stsc211821g00007 902 CDD Ubl_ubiquitin_like 26 93 - -
Stsc211821g00007 902 MobiDBLite consensus disorder prediction 493 512 - -
Stsc211821g00007 902 FunFam Large proline-rich protein BAG6 16 109 - -
Stsc211821g00007 902 Gene3D - 12 108 - -
Stsc211821g00007 902 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 11 900 - -
Stsc211821g00007 902 MobiDBLite consensus disorder prediction 481 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211821g00007 Stsc-Chr211821 28387 34405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211821g00007 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 3.14e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211821g00007 - - gmx:100811870 1246.49