Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211821g00002 ATGAGTTGTTTTTCTTGCCTTGCTGCTGCTGCTGCTGCTGATGACCACGGGAAGCATGGGCCCGGGGAGATGAGCAGAATGGAAGTATTAATTGAGAACTACCTTAAGAAGAATGCAGGGAGAGGGCGGAAAAACAAGAAGCAGGAAGGTGGTCGGGGTCGGGGTGAAAGCAAGACAGTGGCTGCCATCAGCTTTGCTTTTCGGGAGCTTGACTGGGCAACCGACGCTTTCAAGGAAACCAACTTGATTGGGGAAGGCGGTTTTGGAAGGGTGGTTGCTGTAAAACAACTAAATCATGACGGGCATCAAGGTTTTCAAGAATTTGTGACGGAGGTGCTTATGCTTAGCCTCCTCCACCATTCTAATCTCGTTAACTTGATTGGCTACTGCACCGATGGTGAGCAGAGGCTTTTGGTGTATGAATACATGCCCATGGGTAGCCTTGAAGATCATCTTTTTGGGGATCCTAGAACTAGAATGAATAAGGGAGGAGGAGGTTTGGGAGGGCTAAATTGGATAAGTCGAATGAAGATCGCGGCAGGGGCTGCTCGTGGGCTAGAGTATCTCCATTGCAAAGCAAATCCACCTGTTATCTATCGCGACTTGAAATCGGCGAATATCTTATTAGACAATGATTTCAACCCAAAACTTTCTGATTTTGGGCTCGCCAAGCTAGGCCCTGTTGGAGACAACACCCATGTTTCCACCAGAGTCATGGGAACGTATGGTTACTGCGCCCCTGAATATGCCATGAGTGGAAAATTAACTCTTAAATCTGATATTTACAGCTTTGGTGTTGTCTTACTCGAGTTGATCACTGGTCGTAAGGCCATCGATTTCACTAGAAAACAAGGCGAACAAAACTTAGTTTCATGGGCTCGTGCTTTCTTAAGTGACAGGAAAAAGTTTAAGCAAATGATTGACCCTCGTTTGCGGGGAAGCTATCCCGTACGTTCTATGCATCATGCAATTTGTATCACAGCAATGTGTCTCCAGGACCAACCAATTTTCCGTCCGCATGTTCATGATATTGTTGTTGCACTAGATTATATAGTTTCACAGAGTCTGCTTGAATTCGATAAGCATGGAAGACTATCCAGCGTAACGTTGACCCATCATAATTAA 1125 0.4569 MSCFSCLAAAAAADDHGKHGPGEMSRMEVLIENYLKKNAGRGRKNKKQEGGRGRGESKTVAAISFAFRELDWATDAFKETNLIGEGGFGRVVAVKQLNHDGHQGFQEFVTEVLMLSLLHHSNLVNLIGYCTDGEQRLLVYEYMPMGSLEDHLFGDPRTRMNKGGGGLGGLNWISRMKIAAGAARGLEYLHCKANPPVIYRDLKSANILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRKAIDFTRKQGEQNLVSWARAFLSDRKKFKQMIDPRLRGSYPVRSMHHAICITAMCLQDQPIFRPHVHDIVVALDYIVSQSLLEFDKHGRLSSVTLTHHN 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211821g00002 374 Gene3D Transferase(Phosphotransferase) domain 1 143 365 - -
Stsc211821g00002 374 Gene3D Phosphorylase Kinase; domain 1 52 142 - -
Stsc211821g00002 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Stsc211821g00002 374 SMART serkin_6 77 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211821g00002 374 ProSiteProfiles Protein kinase domain profile. 77 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211821g00002 374 SUPERFAMILY Protein kinase-like (PK-like) 62 348 IPR011009 -
Stsc211821g00002 374 PANTHER OS07G0668900 PROTEIN 36 355 - -
Stsc211821g00002 374 FunFam Serine/threonine-protein kinase PBS1 143 364 - -
Stsc211821g00002 374 Pfam Protein tyrosine and serine/threonine kinase 91 347 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211821g00002 Stsc-Chr211821 8467 9949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211821g00002 1 351 Glycoside Hydrolase AT3G07070 52.394 2.17e-128 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Stsc211821g00002 PK_Tyr_Ser-Thr 8.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211821g00002 - - adu:107493287 623.239