Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211813g00003 ATGGAGGGGATTTGGAGTATTTTCTGTGGGGAAGAAACTGGTTGTTCAGAAGCAACAGGAAAGCCATGCAGTTATGATTTCAAGTTTTTGATTGATCCTTCCTCATGCATCAACCATTTCTTGATATCTTGCTTTGATGTGTTGCTTCTTCTCATGCTGCTATTCATTATGATCAAGAAATCACCCTCCAAACCGTTACACGGTCTAACACGGTCTCGTAGACATTCAGCATTGCATCTAGTCTCTGCCATAGCCAGTGTTGCTCTTGGCCTGGTGCATTTGTGCTTAGGCATTTGGGTTTTGGTGGAGAATCTGATGAAAAGCCATACTTCTTTGCCTCTTGACATGTGGTTGCTGGAATTCTTTCAAGGATTGACATGGTTGTCAGTGAGCATAGCAATAATTCTTGGCCTAAAACAGCTTCCAAGACCATGGTTAAGGACGTTCTCTGTTCTTATCTTCTTGGTTTCTGGCTTTTCCTGTGCTTTTTCCTTGTTTTATGTAATTGGTAGCAAAGAGCTGTCCCTTAAGGTAGTTCTAGATATTCTATCTTTACCAGGGGCAATATTATTGTTACTTTGCACATATAAATGCAGGGAAAATGATATGGAGCTTGATGAAAGCCTTTACACCCCATTGAATGGCGAGTCAAACAAAATTGGTTCTATCAACAATGATACACTATATGGAAGAGCTGGTTTCTTTAGTACCATGTCATTTTGGTGGATGAATCCTTTGATGAAGAGGGGTAAAGAGAGCACACTTCAGGAAGAAGATATCCCAAAGTTGCGCGAGCAAGATCAAGCAGAAAGTTGTTACTTACTGTTTCTAGACAACTTGAACAGGAAGAAACAGAATGATCCTTCTTCGCAATCATCGATTTTGTGGACTATAGTTTTATGTCACCGGAGAGAAATTCTGATATCAGGATTCTTTGCATTGCTTAAGGTGCTAGCTGTTTCTGTTGGTCCACTGCTTCTGAATTCCTTCATATTGGTTGCTGAGGGCAATGGAAGCTTCAAATATGAAGGGTTTGTATTGGCCATATCACTTTTCTTTACAAAGGTCATAGAATCTTTATCACAAAGGCAGTGGTACTTCCGAGCCAGACAGATAGGTGTCAAAGTTAGATCTCTTCTCACTGCAGCCATTTATAAAAAACAACTGAGGTTATCAAATTCTGCTAGATTGAATCATTCTGGTGGTGAGATCATGAATTATGTGACTGTGGATGCTTATAGAATTGGAGAATTTCCTTATTGGTTTCACCAGACATGGACGACTAGTGTCCAGCTATGTATCTCCTTGGTAATACTTTTTAACGCCGTCGGGCTAGCTACAATTGCCTCCTTGGTGGTGATAATGCTCACTGTGCTTTGCAATACTCCACTTGCAAAGTTGCAGCATAAGTTCCAAAGCAAACTTATGGTGGCACAAGATGAGAGATTGAAGGCTACTTCTGAGGCTCTTGTGAATATGAAGGTGCTGAAATTGTATGCCTGGGAAACCAACTTCAAGGATTCTATTGAAAGATTGAGGAATGTGGAGCTGAAATGGTTGTCTGCAGTGCAATTGCGCAAGGCCTACAACACCTTTCTCTTCTGGTCCTCGCCTGTGTTGGTATCCGCTGCTTCCTTCGGGGCTTGTTACTTTCTTAACGTTCCGCTGCACGCTAACAATGTTTTCACCTTTGTGGCAACTTTGCGCCTTGTTCAAGATCCAATTAGAATCATTCCTGATGTCATTGGAGTGGTCATTCAGGCCAAAGTTGCGTTTGCCCGGCTTGTAAAGTTCCTTGAGGCACCTGAGCTGCAGAATGCAAATGTCAAGAAGAAGAGTTTCAATGAGAATATGAGGGGCTCAATTTCAATCAAGTCTGCTGACTTTTCATGGGAAGATAATGCATCAAAACCGACGCTGCGAAATATAAACTTAGAGGTTAGGCCAGGGCAAAAGTTGGCCATTTGTGGAGAAGTTGGATCAGGAAAATCAACACTGTTAGCAGCAATTCTCAGAGAAGTTCCTAATACTCGGGGAACTGTTGAAGTTTATGGCAAGTTTGCCTATGTTTCTCAAACAGCATGGATACAGACAGGTACAATAAGGGATAACATATTGTTTGGATCAGCAATGGATACTCAAAAATATAGAGAAACGCTGCAAAGGTCTTCACTAATAAAGGACCTTGAGTTGTTTTCCCACGGTGATCTCACTGAAATAGGGGAGAGAGGAGTTAACCTTAGTGGAGGCCAAAAGCAACGGATTCAACTCGCTCGCGCTCTTTACCAGAATGCTGATATTTATCTCCTGGATGATCCATTCAGTGCTGTTGATGCACATACTGCCACAAATCTGTTTAAGGAATACATCATGGAAGGACTTGCAGGAAAGACAGTTTTGCTTGTCACTCATCAAGTTGACTTTCTTCCTGCATTTGATTCTGTCTTGTTGATGTCAGATGGTGAAATCCTACAAGCTGCTCCTTATCATGATCTGTTGGCTTCAAGTAAAGAATTTCAGGACCTTGTGAGTGCTCACAAAGAGACTGCTGGTTCTGACCGGCTTATGGATGTTACTTCTTCGCAGCGAAATTCTAATTCCGCTGTAGAGATTAGGAAAACTTATGTGGAGAAGCAGTTTGATGCACCGAAAGGAGATCAGCTAATCAAGGAAGAAGAGAGAGAGAAAGGAAACCAAGGCTTCCGGCCTTACTTACAATATCTGAATCAGAACAAAGGATATATGTACTTCTCTGTGGCTGTCATTTCTCAGATTACGTTTGTGGTTGGCCAGGTTTTGCAAAACTCATGGATGGCTGCCAATGTTGACAGTCCTCATCTACTGAATTCTCTCTTTCGCGCACCGATGGCGTTTTATGACTCTACCCCCTTGGGACGGATACTTAGTAGGGTTTCTGCGGATCTCAGCATTGTTGATCTTGATGTCCCATTTGGCCTTCTTTTTGCTGTGGCAGCTACTTCTAACTGTTATGCTAATCTTACAGTCTTAGCAGTTAGATATTACTTTGCTACTGCAAAAGAATTGATGCGGCTCAATGGCACAACAAAATCCTATGTAGCTAATCATCTAGCTGAATCCGTGGCTGGAGCTGTGACAATAAGGGCTTTTGAGGAAGAAGATCGTTTTTTTGCGAAGAATCTTCATTTGATTGATGTCAATGCTAGTCCTTTTTTCCATACTTTTGCAGCTAATGAGTGGTTGATTCAGCGGTTGGAAACAGTCAGTGCAGTTGTTCTTGCATCTGCAGCACTTTGCATGGTTATACTTCCCACTGGGACTTTCACATCTGGATTTATTGGCATGGCTCTCTCATATGGCCTTTCACTTAATATTTCACTAGTATTTTCAATTCAAAACCAGTGCAACATAGAAAATTACATAATATCGGTGGAGAGACTTAATCAATATATGCATGTATCAAGTGAGGCTCCAGAAATTATAGAAGGAAATCGTCCTCCAACAAATTGGCCCCTTGAGGGAAAAGTAGAAATACGTGATTTGCAGATTCGATATAGACCTGATTCGCCTCTTGTACTCCGTGGAATCACTTGCACATTTGAAGGAGGACAGAAGATTGGTATTGTTGGCAGGACAGGTAGTGGAAAGTCTACACTAATAGGCGCTTTGTTCCGGCTAGTGGAGCCGGCCGGTGGAGAGATCATAGTTGATGGCATTAATATTTGTTCCATTGGACTTCATGATTTGAGGTCACGTTTCGGTATCATACCTCAGGATCCTACTCTCTTCAATGGAACAGTCAGATACAATATGGACCCCTTAGGCCAACACACTGATCAAGAGATTTGGGAGGTTCTTGCCAAGTGTCAGTTGCGAGAGGCTGTCCAAGAAAAAGAAGAGGGACTAGATTCCTCAGTCGTTGAAGCTGGGGCGAACTGGAGTATGGGGCAACGGCAATTGTTTTGTCTGGGGCGTGCACTTCTAAGGAGAAGTCAGATATTAGTGCTGGATGAAGCAACTGCATCAATTGACAATGCAACTGATTTGATTCTGCAGAAAACCATTAGGACTGAGTTTGCAGATTGTACTGTAATCACAGTAGCTCACAGGATACCAACTGTGATGGATTGCACTAAGGTTCTTGCCATCAGTGATGGAAAACTGGTAGAGTATGATGAGCCAATGAACTTGATGAAGAGGGAAGGATCACTTTTTGGGCAGCTTGTTAAGGAATACTGGTCTCATTTTCAGTCTGCAGAATCACACTGA 4248 0.4216 MEGIWSIFCGEETGCSEATGKPCSYDFKFLIDPSSCINHFLISCFDVLLLLMLLFIMIKKSPSKPLHGLTRSRRHSALHLVSAIASVALGLVHLCLGIWVLVENLMKSHTSLPLDMWLLEFFQGLTWLSVSIAIILGLKQLPRPWLRTFSVLIFLVSGFSCAFSLFYVIGSKELSLKVVLDILSLPGAILLLLCTYKCRENDMELDESLYTPLNGESNKIGSINNDTLYGRAGFFSTMSFWWMNPLMKRGKESTLQEEDIPKLREQDQAESCYLLFLDNLNRKKQNDPSSQSSILWTIVLCHRREILISGFFALLKVLAVSVGPLLLNSFILVAEGNGSFKYEGFVLAISLFFTKVIESLSQRQWYFRARQIGVKVRSLLTAAIYKKQLRLSNSARLNHSGGEIMNYVTVDAYRIGEFPYWFHQTWTTSVQLCISLVILFNAVGLATIASLVVIMLTVLCNTPLAKLQHKFQSKLMVAQDERLKATSEALVNMKVLKLYAWETNFKDSIERLRNVELKWLSAVQLRKAYNTFLFWSSPVLVSAASFGACYFLNVPLHANNVFTFVATLRLVQDPIRIIPDVIGVVIQAKVAFARLVKFLEAPELQNANVKKKSFNENMRGSISIKSADFSWEDNASKPTLRNINLEVRPGQKLAICGEVGSGKSTLLAAILREVPNTRGTVEVYGKFAYVSQTAWIQTGTIRDNILFGSAMDTQKYRETLQRSSLIKDLELFSHGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATNLFKEYIMEGLAGKTVLLVTHQVDFLPAFDSVLLMSDGEILQAAPYHDLLASSKEFQDLVSAHKETAGSDRLMDVTSSQRNSNSAVEIRKTYVEKQFDAPKGDQLIKEEEREKGNQGFRPYLQYLNQNKGYMYFSVAVISQITFVVGQVLQNSWMAANVDSPHLLNSLFRAPMAFYDSTPLGRILSRVSADLSIVDLDVPFGLLFAVAATSNCYANLTVLAVRYYFATAKELMRLNGTTKSYVANHLAESVAGAVTIRAFEEEDRFFAKNLHLIDVNASPFFHTFAANEWLIQRLETVSAVVLASAALCMVILPTGTFTSGFIGMALSYGLSLNISLVFSIQNQCNIENYIISVERLNQYMHVSSEAPEIIEGNRPPTNWPLEGKVEIRDLQIRYRPDSPLVLRGITCTFEGGQKIGIVGRTGSGKSTLIGALFRLVEPAGGEIIVDGINICSIGLHDLRSRFGIIPQDPTLFNGTVRYNMDPLGQHTDQEIWEVLAKCQLREAVQEKEEGLDSSVVEAGANWSMGQRQLFCLGRALLRRSQILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTKVLAISDGKLVEYDEPMNLMKREGSLFGQLVKEYWSHFQSAESH 1415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211813g00003 1415 SUPERFAMILY ABC transporter transmembrane region 295 600 IPR036640 GO:0005524|GO:0016020
Stsc211813g00003 1415 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 946 1132 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc211813g00003 1415 Pfam ABC transporter 1186 1334 IPR003439 GO:0005524
Stsc211813g00003 1415 Pfam ABC transporter 640 774 IPR003439 GO:0005524
Stsc211813g00003 1415 CDD ABCC_MRP_domain1 622 822 - -
Stsc211813g00003 1415 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 624 845 IPR003439 GO:0005524
Stsc211813g00003 1415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1159 1396 IPR027417 -
Stsc211813g00003 1415 SMART AAA_5 1195 1387 IPR003593 GO:0016887
Stsc211813g00003 1415 SMART AAA_5 649 822 IPR003593 GO:0016887
Stsc211813g00003 1415 FunFam ABC transporter C family member 10 605 858 - -
Stsc211813g00003 1415 SUPERFAMILY ABC transporter transmembrane region 938 1152 IPR036640 GO:0005524|GO:0016020
Stsc211813g00003 1415 CDD ABC_6TM_ABCC_D1 308 595 IPR044746 GO:0140359
Stsc211813g00003 1415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 844 IPR027417 -
Stsc211813g00003 1415 CDD ABC_6TM_ABCC_D2 916 1144 IPR044726 GO:0140359
Stsc211813g00003 1415 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1171 1403 IPR003439 GO:0005524
Stsc211813g00003 1415 CDD ABCC_MRP_domain2 1167 1387 - -
Stsc211813g00003 1415 Pfam ABC transporter transmembrane region 908 979 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc211813g00003 1415 Pfam ABC transporter transmembrane region 306 572 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc211813g00003 1415 Gene3D ABC transporter type 1, transmembrane domain 278 604 IPR036640 GO:0005524|GO:0016020
Stsc211813g00003 1415 Gene3D ABC transporter type 1, transmembrane domain 880 1150 IPR036640 GO:0005524|GO:0016020
Stsc211813g00003 1415 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 307 587 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc211813g00003 1415 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 231 940 - -
Stsc211813g00003 1415 FunFam ABC transporter C family member 10 290 603 - -
Stsc211813g00003 1415 ProSitePatterns ABC transporters family signature. 747 761 IPR017871 GO:0005524|GO:0016887
Stsc211813g00003 1415 Gene3D - 1153 1404 IPR027417 -
Stsc211813g00003 1415 FunFam ABC transporter C family member 3 1152 1404 - -
Stsc211813g00003 1415 Gene3D - 620 852 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211813g00003 Stsc-Chr211813 35704 41171 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211813g00003 616 868 Calmodulin-binding Proteins AT2G36910 30.576 1.49e-22 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211813g00003 K05666 - gmx:100811468 2314.26