Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211813g00002 ATGGAGAGTTTCTGGAGCATGTTTTGTGGTGAATCTGGTTGTTCAGGAAATCCTTATTGCAGTTATGATTTCAAGTTTTTGAAAGATCCTTCCACATGTATCAACCATTTTCTGATCATATGCATTGATGTGTTGCTTCTCATCATGATCTCATCAATCACCATGTTTCACAAGCCCTCACCACTGAAAAAGCAACATCATCATGGCCTAGTCCAGGGGCAAAGCTATTCAGCATTGCAGCTAGCTTCTGCCATAGCCAATGGCTCTTCGGGCTTGGTACATTTGATCTCAGGATTCTGGTTCCTGGAAGAGAATCTGAGAAAAACCAGAACTGTTTTGCCTCTTGATTGGTGGTTTCTTGAATTCATTCAAGGGCTGACATGGTTGTTGGTAGGATTAACCATGAGTCTTAGGGTGAAAGAACTTCCAAGAACATGGCTAAGGCTGATTTCTGTTCTTGTTTTCTTGATTTCTGGAATTCTTTGTGCTTTGTCCTTGTGCTATGCAGTTAGTAGCAGAGGATTGTCCCTTAAGTTTTCTCTAGATGTTCTATCTTTTAGCGGCGCAATTTTATTGCTACTATGCAGTTACAAGGAATCTAGGCATAGACACACTGATGGAGGAGAAATCCATGAAAGCCTTTACATGCCTTTGAATGATGAATCCATGTCCAACTCAGTTGATTCTGATTCTGTTAGCTCTGTCACCCCATTTTCCGGAGCCGGAATCTTCAGTTGGATGTCATTTTGGTGGTTGAATCCATTGATGAAAAGAGGAAAACAGAAAACACTTGAGGAACAAGACATTCCCAAGCTGCGAGAGCCCGACCGAGCAGAAAGTTGTTACTTGCAGTTCCAAGAAGAACTGAACAAGCAGAAGATGAAAGAACCATCAGCACAGCAGCCATCATCACTCTTGAGGACAATAATCATTTGCCATTGGAAAGAGATTCTGATCTCAGGATTCTTTGCATTGCTTAAGGTGATAACTCTCTCTTGTGGACCTCTGCTTCTAGATTCCTTCATACTTGTTGCTGAGGGTAATGAGAGTTTCAAATATGAAGGTTATGTATTGGCCATATCATTGGTCATTACAAAGATCATAGAATCTTTATCTCAAAGGCAATGGTACTTCAGGACCAGACTAATTGGTTTGAAAGTTAGATCACTGCTTATTGCAGCTATTTACAAGAAGCAACTGAGATTATCCAATGCTGCTAGATTGAATCATTCTGGTGGTGAGATCATGAACTATGTGAATGTGGATGCTTATAGAATTGGAGAATTTCCCTATTGGTTTCACCAGACATGGACCACCAGTGTTCAGCTTTGTATCGCCTTAGTAGTACTTTTTCGCGCCGTTGGGCTCGCCACGTTTGCTTCACTGGCTGTGATACTTCTCACTGTGCTTTGCAATACTCCACTTGCAAAGTTACAGCACAAGTTCCAGAGGAAACTTATGGTGGCGCAGGACGAGAGACTGAAGGCTACTTCTGAGGCTCTTGTGAATATGAAGGTGCTGAAGCTATATGCCTGGGAAACCAATTTCAGAAATGTCATTGAAAGATTGAGGAATGTTGAGCTGAAAAGACTTTCTGTAGTGCAATTGAGGAAGGCATATAGCAATTTTCTCTTTTGGGCTTCACCTGTTTTGGTATCTGCTGCATCCTTTGGAGCATGCTACCTTCTTGATGTTCCTCTACATGCCAACAATGTTTTCACTTTTGTCGCGACTCTGCGCCTCGTTCAAGATCCTATTAGAACCATCCCTGATGTTATTGGGGTGGTGATCCAAGCAAAAGTTGCATTCTCAAGGATTGTGAAATTCCTTGAGGCACCTGAACTAGACAGCCAAAGTTTCAAGAAGAAGCATTTTAGTGAAAACATAAGAGGTTCAATTTCAATCAAGTCTGCTGAGTTTTCTTGGGAAGGTAATGCATCAAAACCAACTCTGAAGAACATAAATTTGGAGGTTAGAGCAGGCCAAAATGTGGCTATCTGTGGAGAAGTTGGATCTGGAAAATCAACCCTCTTAGCAGCAATTCTCAGAGAAGTTCCCATAACTTGCGGAACTATTGAAGTTTATGGAAAGTTTGCCTATGTTTCTCAAACGGCATGGATACAGACAGGTACAATAAGGGATAACATATTGTTTGGATCAGAAATGGATGCTGGAAAGTATCAAGAAACACTTCACAGGTCTTCACTAGTGAAGGACCTTGAGCTGTTTCCCCATGGTGATCTCACTGAGATAGGGGAGAGAGGAGTTAACCTGAGTGGAGGCCAGAAGCAACGGATTCAACTCGCTCGCGCTCTTTACCAAGATGCTGATATATACCTCCTGGATGATCCATTCAGTGCTGTTGATGCACATACTGCCACAAACTTATTCAATGTAATTGCCAAATTCTTCACTTCAGTATTCACATATTGTAATCATGGCTTCATTGATCTTAGTAGAGTGAAGAATGGCTTTGAAACTTTGCAGGATTACATCATGGAAGGACTTGCAGGGAAGACAGTCTTGCTTGTCACACATCAAGTTGATTTTCTTCCAGCTTTTGATTCTGTTTTGTTGATGGCAGAGGGGAAAATCCTACAAGCTGCTCCTTATCACCATCTCTTGAACTCAAGCCAAGAATTTCAAGATCTTGTTCAAGCTCATAAAGAAACCGCCGGATCGGACAGGCTTGTAGATGCTACTTCTTCTTCTTCTAACAGACTTACAGACACTCCTGGCGAGATAAGGAAAACATATCCAGAGAATCAGTTGGAAACATCGCGTGGTGAGGGAGATCAATTGATCAAGCAAGAAGAAAGAGAAGTAGGAGACAGGGGATTCAAGCCATACTTACAGTATCTGAATCAAAACAAAGGATATGTGTACTTCACTGTGGCTGCACTTTCTCACCTCTCATTTGTGATTGGCCAGACATTGCAGAACTGGTGGATGGCTGATAAAGTTGATGATTCTAATGTCAGCACATTGCATCTCATTGTTGTCTACTTGATAATTGGATTTGCTTCAACATTTTTCTTGTTGATTAGAAGCCTTGTAGCGGTTGCTTTGGGCCTTCAATCATCAAAATCTATGTTCTTACAGCTACTGAATTCCCTTTTCTGCGCACCGGTGTCCTTTTATGACTCCACACCATTAGGAAGAATTCTTAGCAGAGTCTCCTCTGATCTTAGCATTGTTGATCTTGATGTTCCATTTAGCCTTGTTTTCGCAGTGGGAGCTACGAACACTTGCTATGCCAATCTTATAGTCTTAGCAGTGATTACTTGGCAAGTGTTGTGTGTCTCTATACCAATGGTTTATATAGCAATTCGCTTGCAGAGCTACTACTTTGCCACTGCAAAAGAATTGATGCGGATGAATGGCACAACAAAATCATATGTAGCCAATCATTTAGCCGAATCTGTAGCCGGGGCTGCGACGATAAGGGCTTTCGAGGAAGAACACCGGTTTTTCTTGAAGAATCTTGACCTCATTGATGTGAATGCAAGCCCTTTCTTCCACAGTTTTGCAGCAAATGAGTGGCTGATGCTACGGTTAGAAACAATCAGTGCAGTTGTTTTTGCAGCAGCAGCACTTTCCATGGTGATGCTTCCACCAGGAACTTTCACCTCAGGATTCATTGGCATGGCTCTATCATATGGGCTTTCATTGAACTCTTCCCTAGTATTTGCAATCCAAAATCAATGCACTGTAGCAAACCAGATAATATCAGTGGAGAGATTAAACCAGTACATGTATATAGAAAGTGAGGCTCCTGAAATTATTCAAGAAAATCGCCCTCCTCCTAATTGGCCTCTTAAGGGAAAAGTGCAGATACATAATTTGAAGATAAGATATAGGGAAAGTGCACCACTTGTACTACGTGGAATCACATGCACATTTGAAGGAGGAGACAAGATTGGAATAGTTGGAAGAACAGGTAGTGGAAAATCAACATTGATAGGTGCATTGTTCCGTTTGGTGGAGCCAGCAGGTGGAAGGATCATAGTAGATGGCATTGATATTTGCTCAATTGGACTCCATGATTTGAGATCACGTTTTGGTATCATACCTCAGGATCCTACTCTCTTCAATGGCACAGTTAGATACAATTTAGACCCCTTATCTCACCACTCTGATCATGACATTTGGGAGGTTCTTGGTAAGTGTCAGTTAAGGGAAGTTGTGAAAGACAAAGAAGATGGATTAGACTCTTCGGTTGTTGAAGCTGGGGCAAACTGGAGCATGGGACAAAGGCAACTGTTCTGTTTGGGGCGTGCTCTTCTGAGGAGAAGTAAAATCTTGGTGCTCGATGAAGCAACTGCATCAATTGATAATGCAACTGATTTGATTCTGCAGAAAACAATTAGAACAGAGTTTGCAGATTGTACTGTCATCACAGTAGCACATAGGATTCCAACTGTCATGGATTGCACAAAGGTCGCTGCTATCAGTGATGGAAAACTGGTTGAGTATGATGAGCCGATGAAGTTGACGAAGGATGAAGGATCATTGTTTGGACAGCTTGTTAAGGAATACTGGTCTCATTTTCAGTCTGCAGAATCTCACTGA 4572 0.418 MESFWSMFCGESGCSGNPYCSYDFKFLKDPSTCINHFLIICIDVLLLIMISSITMFHKPSPLKKQHHHGLVQGQSYSALQLASAIANGSSGLVHLISGFWFLEENLRKTRTVLPLDWWFLEFIQGLTWLLVGLTMSLRVKELPRTWLRLISVLVFLISGILCALSLCYAVSSRGLSLKFSLDVLSFSGAILLLLCSYKESRHRHTDGGEIHESLYMPLNDESMSNSVDSDSVSSVTPFSGAGIFSWMSFWWLNPLMKRGKQKTLEEQDIPKLREPDRAESCYLQFQEELNKQKMKEPSAQQPSSLLRTIIICHWKEILISGFFALLKVITLSCGPLLLDSFILVAEGNESFKYEGYVLAISLVITKIIESLSQRQWYFRTRLIGLKVRSLLIAAIYKKQLRLSNAARLNHSGGEIMNYVNVDAYRIGEFPYWFHQTWTTSVQLCIALVVLFRAVGLATFASLAVILLTVLCNTPLAKLQHKFQRKLMVAQDERLKATSEALVNMKVLKLYAWETNFRNVIERLRNVELKRLSVVQLRKAYSNFLFWASPVLVSAASFGACYLLDVPLHANNVFTFVATLRLVQDPIRTIPDVIGVVIQAKVAFSRIVKFLEAPELDSQSFKKKHFSENIRGSISIKSAEFSWEGNASKPTLKNINLEVRAGQNVAICGEVGSGKSTLLAAILREVPITCGTIEVYGKFAYVSQTAWIQTGTIRDNILFGSEMDAGKYQETLHRSSLVKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTATNLFNVIAKFFTSVFTYCNHGFIDLSRVKNGFETLQDYIMEGLAGKTVLLVTHQVDFLPAFDSVLLMAEGKILQAAPYHHLLNSSQEFQDLVQAHKETAGSDRLVDATSSSSNRLTDTPGEIRKTYPENQLETSRGEGDQLIKQEEREVGDRGFKPYLQYLNQNKGYVYFTVAALSHLSFVIGQTLQNWWMADKVDDSNVSTLHLIVVYLIIGFASTFFLLIRSLVAVALGLQSSKSMFLQLLNSLFCAPVSFYDSTPLGRILSRVSSDLSIVDLDVPFSLVFAVGATNTCYANLIVLAVITWQVLCVSIPMVYIAIRLQSYYFATAKELMRMNGTTKSYVANHLAESVAGAATIRAFEEEHRFFLKNLDLIDVNASPFFHSFAANEWLMLRLETISAVVFAAAALSMVMLPPGTFTSGFIGMALSYGLSLNSSLVFAIQNQCTVANQIISVERLNQYMYIESEAPEIIQENRPPPNWPLKGKVQIHNLKIRYRESAPLVLRGITCTFEGGDKIGIVGRTGSGKSTLIGALFRLVEPAGGRIIVDGIDICSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSHHSDHDIWEVLGKCQLREVVKDKEDGLDSSVVEAGANWSMGQRQLFCLGRALLRRSKILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTKVAAISDGKLVEYDEPMKLTKDEGSLFGQLVKEYWSHFQSAESH 1523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211813g00002 1523 FunFam ABC transporter C family member 10 301 614 - -
Stsc211813g00002 1523 FunFam ABC transporter C family member 5 926 1258 - -
Stsc211813g00002 1523 FunFam ABC transporter C family member 3 1260 1512 - -
Stsc211813g00002 1523 CDD ABCC_MRP_domain1 633 864 - -
Stsc211813g00002 1523 MobiDBLite consensus disorder prediction 896 912 - -
Stsc211813g00002 1523 Gene3D ABC transporter type 1, transmembrane domain 283 615 IPR036640 GO:0005524|GO:0016020
Stsc211813g00002 1523 Gene3D ABC transporter type 1, transmembrane domain 925 1258 IPR036640 GO:0005524|GO:0016020
Stsc211813g00002 1523 SMART AAA_5 1303 1495 IPR003593 GO:0016887
Stsc211813g00002 1523 SMART AAA_5 660 864 IPR003593 GO:0016887
Stsc211813g00002 1523 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 318 598 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc211813g00002 1523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1266 1503 IPR027417 -
Stsc211813g00002 1523 Pfam ABC transporter transmembrane region 318 583 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc211813g00002 1523 Pfam ABC transporter transmembrane region 971 1219 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc211813g00002 1523 FunFam Multidrug resistance-associated protein 4 618 823 - -
Stsc211813g00002 1523 Gene3D - 631 894 IPR027417 -
Stsc211813g00002 1523 Pfam ABC transporter 651 785 IPR003439 GO:0005524
Stsc211813g00002 1523 CDD ABC_6TM_ABCC_D2 959 1252 IPR044726 GO:0140359
Stsc211813g00002 1523 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 973 1240 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc211813g00002 1523 SUPERFAMILY ABC transporter transmembrane region 306 611 IPR036640 GO:0005524|GO:0016020
Stsc211813g00002 1523 Pfam ABC transporter 1294 1442 IPR003439 GO:0005524
Stsc211813g00002 1523 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 635 887 IPR003439 GO:0005524
Stsc211813g00002 1523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 626 806 IPR027417 -
Stsc211813g00002 1523 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1277 1511 IPR003439 GO:0005524
Stsc211813g00002 1523 Gene3D - 1260 1512 IPR027417 -
Stsc211813g00002 1523 CDD ABC_6TM_ABCC_D1 319 606 IPR044746 GO:0140359
Stsc211813g00002 1523 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 239 1511 - -
Stsc211813g00002 1523 CDD ABCC_MRP_domain2 1275 1495 - -
Stsc211813g00002 1523 MobiDBLite consensus disorder prediction 895 931 - -
Stsc211813g00002 1523 SUPERFAMILY ABC transporter transmembrane region 963 1260 IPR036640 GO:0005524|GO:0016020
Stsc211813g00002 1523 ProSitePatterns ABC transporters family signature. 758 772 IPR017871 GO:0005524|GO:0016887
Stsc211813g00002 1523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 827 879 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211813g00002 Stsc-Chr211813 7443 19091 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211813g00002 627 912 Calmodulin-binding Proteins AT2G36910 24.510 2.31e-20 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211813g00002 K05666 - qsa:O6P43_004221 2126.29