Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211812g00006 ATGGAAATGGAAACGGAAAAGGAAAACTCAAACTCAAACTCCGAAACCTTACTTCCTTCCAATTCCAAATACGTTCGCTACAACATTCTTGGAAACTTATTCGACGTTTATTCTCACTACGTTCCTCCCATCCAACCCGTTGGCCGTGGCGCTTACGGCGTCGTTTGCTGCGCGACGAATTGGGAGACCAAAGAAGGTGTTGCAATCAAGAAGATCGGGAATGCCTTTGATAACAGGATCGATGCGAAGAGGACTCTCCGGGAAATCAAGCTCCTCTGTCACATGGATCATGATAACGTGATTAAGATTAAGGATATAATTAGGCCAGCTGAGAGGGAAAAGTTTAATGACGTGTACATAGTTTATGAGCTGATGGACACTGATCTCCATCAGATTATTCAGTCTAACCAGCCTCTCACTGATGATCACTGCCAGTATTTCTTATACCAGCTCTTGAGAGGATTAAAGTATGTACACTCTGCCAATGTTTTGCACCGAGATCTAAAGCCAAGCAATTTACTTCTCAATGCAAACTGTGATCTCAAAATATGTGACTTTGGGCTTGCCAGAACAACATCTGAGACAGACTTTATGACAGAATATGTCGTCACTCGTTGGTACAGAGCCCCTGAATTGCTATTGAACTGTTCAGAATATACTGCAGCTATTGATATCTGGTCAGTTGGATGCATTTTGATGGAAATAATTAGAAGGGAACCTTTGTTTCCTGGTAAAGATTATGTTCAGCAGTTGGCACTTATAACTGAGTTACTTGGTTCACCAGATGAATCGGATCTTGGATTCCTCAGAAGTGAGAATGCAAAGAAATATGTTAAGCAGCTCCCACACGTAGAGAAGCAGCCATTTGCACAGAGGTTTCCTGATGTGTCCCCATTGGCAATTGATCTTGCTGAGAAAATGTTGGTTTTTGATCCCTCAAAACGCATAACCGTTGAGGAAGCACTGAATCACCCATATTTGTCAAGCCTTCATGAGATAAACGAGGAGCCCACTTGCCCAAGTCCATTCGTCTTTGATTTTGAACAGACAAGTCTGAATGAAGAAGATATAAAGGAGCTCATATGGCAAGAGTCTCTGCACTTCGGCCAGGATCAGATGCTCGAATAA 1128 0.4255 MEMETEKENSNSNSETLLPSNSKYVRYNILGNLFDVYSHYVPPIQPVGRGAYGVVCCATNWETKEGVAIKKIGNAFDNRIDAKRTLREIKLLCHMDHDNVIKIKDIIRPAEREKFNDVYIVYELMDTDLHQIIQSNQPLTDDHCQYFLYQLLRGLKYVHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILMEIIRREPLFPGKDYVQQLALITELLGSPDESDLGFLRSENAKKYVKQLPHVEKQPFAQRFPDVSPLAIDLAEKMLVFDPSKRITVEEALNHPYLSSLHEINEEPTCPSPFVFDFEQTSLNEEDIKELIWQESLHFGQDQMLE 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211812g00006 375 ProSitePatterns MAP kinase signature. 76 179 IPR003527 GO:0004707|GO:0005524|GO:0006468
Stsc211812g00006 375 FunFam Mitogen-activated protein kinase 26 135 - -
Stsc211812g00006 375 FunFam Mitogen-activated protein kinase 125 354 - -
Stsc211812g00006 375 SMART serkin_6 41 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211812g00006 375 CDD STKc_TEY_MAPK 34 368 - -
Stsc211812g00006 375 SUPERFAMILY Protein kinase-like (PK-like) 44 333 IPR011009 -
Stsc211812g00006 375 ProSitePatterns Protein kinases ATP-binding region signature. 47 71 IPR017441 GO:0005524
Stsc211812g00006 375 Pfam Protein kinase domain 45 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211812g00006 375 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 40 328 - -
Stsc211812g00006 375 Gene3D Phosphorylase Kinase; domain 1 24 364 - -
Stsc211812g00006 375 ProSiteProfiles Protein kinase domain profile. 41 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211812g00006 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Stsc211812g00006 375 Gene3D Transferase(Phosphotransferase) domain 1 125 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211812g00006 Stsc-Chr211812 47001 49632 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211812g00006 17 368 MAP Kinase Gene Family AT1G07880 79.830 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Stsc211812g00006 Pkinase 1.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211812g00006 K04371 - gmx:100802929 674.085