Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211812g00005 ATGGGTGAATTGATCAGGGTATTGCTTAATGGAGAGCTGGGTTCTGGGTCATCAAATGATGATAATACAAGATTCAACAGGCCGACCAGAGATGGAAACAATGGGTTGCGGGGACAAAATCAAGTCCATGACAGCGTGCAGATTTCGCAACAACCACCGCAAGGTCCAGTTATATGCTGGGAGAGATTTCTCCCTGTAAGATCAATAAAAGTTCTGCTGGTGGAAGATGATGATTCAACACGCCATGTTGTGCGTGCTCTTTTACGAAATTGTAGTTATGAAGTCACTGCTGTTTCCAATGGTCTTCAAGCATGGAAAATCCTAGAAGATCCAGGAAATCATATTGATCTTGTCCTAACAGAGGTAGCTATACCTATTTTATCCGGAATAGGTCTTCTGTGCAAGATCATGAACCACAAAACACTGAAAAACATTCCTGTGATTATGATGTCATCCCATGATTCTATGGGTATAGCGTTTAAGTGTTTGTCAAAAGGTGCGGTTGACTTTTTAGTGAAACCTATTCGGAGGAATGAACTTAGAAACCTCTGGCAGCACGTTTGGAGAAGATGCCACAGTTCGAGTGGTAGTGGGAGTGAAAGTGGGACACACAATAGAAAATCTGCCAAGACAAGAAGTAACGATGCGTCAGAAAATAATAGCGACAGCAGCGATGAGAATGATTGTGGAAGTAGAGACTTGACTGTTCGAGATGGAAGTGACAATGGAAGTGGCACTCAGAGTTCATGGACTAAATGTCTAGTTCAAGTTGGCAGTTCTCATCCAGTTTCACCTCATAAACAATTGGTTGATGCCCCTGATAGCACTTGTGCCGAAGTGATGCATACAAAGCCTGAGAAAGCTAGTAGTAGGTGGATGCATGCAACAGAAAAAGAGTGCCGTGAACTGGTTGACCATCTTGATAATGTTGCAATGGGTAAAGATTTGGCTATGGGAATAACTTCGAATGTGCAACCAGAGCATCCACCCAAGGAGTTGTCTAGCAATCCTTCGGGTAAAGGGATAGATATTATGTCTGATGTAGATGGTAAGCATCCCAATAAGGGACATAGTAATGTCTGTGAAAAAGGGCAACTGGATTTCAACAGTGATAAAAACAAGCCTCAAGAAAATCAGGCTATGAATGTTGTTGATGTTACTGATAGCAGCAGTCCACAGGCTGAAAGCAGAGACTTGAACACTCCAAATGGATTTTCCGGTTTCTCACAAACTAAAGCAAGTTGTTCCTTTAAACAGCATCCTTCCCTTGAACTGACTTTGAAAAGACTCGGAGAAACAAGAGATGCTAAAATTGTCACAAGTGATGAATGCAATATTTTGAGACATTCAGATCTGTCGGCATTCTCAAAATATAATACTGCTTCTTCTGCTAACCAGTCATCTCGTGGACTTATGTGGTTTTCCCTATACTCCCCCATCATATGTGTCAGATATGATGAGCAATTATGCCTAACCAACAAGGACACTCCTCCAAATCAGCAGTCTAATGGGAGCAACAATACCAATGACATGGCCTCCACTAATGCATGTCTTGGCACCAAACCTGAAACTTTGGACAAGAAGCTAGAATCTGCAAGAGGGATTGGCTCTTTTAATTCTTCCGGATTGCAAAATGTGCAGCACAATGGTATCTCTTCATCTCAAAAGAAAATTTCTGCCCAAGGAGAATATGCAGAAATTGTTAAAGGACAAGTGGAATGCTCTGAACAAGGATTACAACTCCAGCAAAATCACTATCAGATTCATCATTACAATCACATTGCTCATAAAGCTGCTCTAGATCTCCGGTCAGGTCATGATGATCCCTCAATGAAAGGCTCCTCCAAGGCTGCCCAGCAATGTGTATCATCAAATGTGTTTGGTGGGCCAGCAGAAAGTAATGCTGCAAACTTTGGCATAGATGGAAATGCGGTTGAGAGTGACCATGGGAGCAATGGACAGGATGCATGCAGTAACACCTTGACAGTTAGAACTATGAATGTGGAAAATGGTAATGTAGCAAGTGGGAGCAATGGAGGAGATCTTTGTAGCCTGCAGAATTTTCAATTTGAGTATAAGAATTTGGTTCGATACCACAGCCGGAAAAAGCTAGCAGAACAGCGGCCACGAATCCGCGGACAATTTGTTAGACGGATAGCGTCTGACCCCAAAACAGAAAAACATATACAAAGCAACAACATGGATTCAAGCGATGCTCCCCAATGA 2226 0.4236 MGELIRVLLNGELGSGSSNDDNTRFNRPTRDGNNGLRGQNQVHDSVQISQQPPQGPVICWERFLPVRSIKVLLVEDDDSTRHVVRALLRNCSYEVTAVSNGLQAWKILEDPGNHIDLVLTEVAIPILSGIGLLCKIMNHKTLKNIPVIMMSSHDSMGIAFKCLSKGAVDFLVKPIRRNELRNLWQHVWRRCHSSSGSGSESGTHNRKSAKTRSNDASENNSDSSDENDCGSRDLTVRDGSDNGSGTQSSWTKCLVQVGSSHPVSPHKQLVDAPDSTCAEVMHTKPEKASSRWMHATEKECRELVDHLDNVAMGKDLAMGITSNVQPEHPPKELSSNPSGKGIDIMSDVDGKHPNKGHSNVCEKGQLDFNSDKNKPQENQAMNVVDVTDSSSPQAESRDLNTPNGFSGFSQTKASCSFKQHPSLELTLKRLGETRDAKIVTSDECNILRHSDLSAFSKYNTASSANQSSRGLMWFSLYSPIICVRYDEQLCLTNKDTPPNQQSNGSNNTNDMASTNACLGTKPETLDKKLESARGIGSFNSSGLQNVQHNGISSSQKKISAQGEYAEIVKGQVECSEQGLQLQQNHYQIHHYNHIAHKAALDLRSGHDDPSMKGSSKAAQQCVSSNVFGGPAESNAANFGIDGNAVESDHGSNGQDACSNTLTVRTMNVENGNVASGSNGGDLCSLQNFQFEYKNLVRYHSRKKLAEQRPRIRGQFVRRIASDPKTEKHIQSNNMDSSDAPQ 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211812g00005 741 SUPERFAMILY CheY-like 67 193 IPR011006 -
Stsc211812g00005 741 SMART REC_2 69 184 IPR001789 GO:0000160
Stsc211812g00005 741 FunFam Two-component response regulator-like PRR37 69 227 - -
Stsc211812g00005 741 ProSiteProfiles CCT domain profile. 676 718 IPR010402 GO:0005515
Stsc211812g00005 741 PANTHER TWO-COMPONENT RESPONSE REGULATOR 70 333 IPR045279 GO:0009736
Stsc211812g00005 741 MobiDBLite consensus disorder prediction 15 39 - -
Stsc211812g00005 741 Gene3D - 68 245 - -
Stsc211812g00005 741 ProSiteProfiles Response regulatory domain profile. 70 188 IPR001789 GO:0000160
Stsc211812g00005 741 MobiDBLite consensus disorder prediction 363 378 - -
Stsc211812g00005 741 MobiDBLite consensus disorder prediction 322 378 - -
Stsc211812g00005 741 Pfam Response regulator receiver domain 71 182 IPR001789 GO:0000160
Stsc211812g00005 741 MobiDBLite consensus disorder prediction 192 248 - -
Stsc211812g00005 741 MobiDBLite consensus disorder prediction 720 741 - -
Stsc211812g00005 741 CDD psREC_PRR 71 174 - -
Stsc211812g00005 741 Pfam CCT motif 692 717 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211812g00005 Stsc-Chr211812 30532 36850 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211812g00005 16 274 Response Regulator Gene Family AT5G60100 63.019 3.92e-91 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Stsc211812g00005 Response_reg 2.8e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211812g00005 K12129 - gmx:100785796 893.649