Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211812g00002 ATGGAGGAAAAATCATCGTCAACGACGTCGTTTCGGAGAGACTCTAGCGGCTCACTCCAAGTGTTCAATCCTTCTTATTCTTCCCGCGAAAAACCACAAAACTCGCCCGTGCGATCTCAACCTCCATGGAAACCATGGCCAGAACAATCGCGAACTTCCAGATCCGCTCCTTCGTCGGAAGACACCAACGCCTCCACCTCATGGGAGGCGGCGGCGCAGAGGGCGGCAGAGTGGGGAGTAGTGCTGAGGACGGACACGGAGACAGGAAAGCCACTAGGAGTAGTGGCGCGTGGAGGAGGGAGTAGCAGTAGTAGTGAAGTGAGGGTGGCGCGTGGAGTTCCTCGCGTATCGGAGGATGTTCGAGATGCGCTTTCAACGTTTCAACAAACTTTCGTAGTTTCGGACGCCATGAAAGCAGATCATCCAATACTGTATGCGAGTGGCGGTTTCTTCAACATGACTGGTTACACCTCCAAAGAAGTGATTGGCAGAAACTGTCGGTTTTTACAGGGAGTAGGTACAGATCCGGGTGAGGTGGCAAAGATAAGGGAAGCTTTGGAAAGAGGGGCGACTTATTGTGGAAGGTTGCTTAACTACAAGAAAGATGGCACTCCCTTTTGGAACCTTCTTACTGTTTCTCCAATCAAGGACCAACATGGCAATCTCCTCAAATTTATTGGAATGCTAGTGGAAGTTAGCAAGCACACTGAGGGGTCGAAGGAAAACATGCTACGCCCCAATGGACTCCCCGAATCATTGATTCGATATGCCGCTAGAGAGAAAGAGAAGGCAAGGAGTTCAGCAAAAGAGTTAGTGGAAGCCATGAAGATGAAGAGGCTGCCGCTGCCTTCGTTCACCGATTCAGGAAACAACCACCACCGTCCCTTGGCGATGTCTAATAATGATGCCAAAACTAAGAAGAAGAAAGCACCTCCTCCAAGAGCATTATTAAGGAGAAAATCAGATAGTAGTGTCATTACTTCTTCTACACGTAAATCACTTCCTGCACTTGCAGAACATTCTAGAACCAACTCATCAATGCACCCTCCTATCACTCACATTCCTCCTCTTCCTCTTAACAACAAACTTAATAAGAGTAGATCCCGCCGTCGCCTTTCTTTCATGGGGTTCATTAGGAAAAGTATGTCTAGCTATGAGGAAGCTGATGAGGAGAGTTTTGAGAGTGAGGAGGATAATAATGATGATAATGTGATGATGAAGGAAAAGAGAAAGGGGTTTGATCTTGCTACCACACTCGAGCGCATTGAGAAGAACTTTGTCATTACTGATCCAAGGCTACCAGATAATCCTATAATCTATGCATCTGATAGCTTCTTAGAACTTACAGAGTATAGTAGGGAAGAGATCTTGGGAAGAAACTGCAGATTTCTGCAAGGACCTGAAACTGATCGAGCTACAGTGAGAAAAATTAGAGAGGCTATTGACAACCAAATAGAAATTACTGTGCAGCTCATTAATTATACAAAGAGTGGTAAGAAGTTTTGGAATCTGTTTCATTTGCAACCTATGAGAGATCAGAAGGGAGAAGTGCAGTATTTTATTGGTGTTCAACTTGATGGTAGCCAACATTTGGAGCCTCTTCACAACTGCATTGCAGATGATACTGCCATAGAGGGACAGTTATTGGTAAAACAAACTGCTGAAAATGTTGATGATGCAGTTAGAGAACTTCCAGATGCTAATATGAAACCAGAAGATCTATGGATGAACCATTCAAAAGTGGTTCACCCTAAACCTCATAGAAAAGATGGTGCTGCTTGGACAGCTATTCAAAAGATTCTGGAGAGTGGAGAAGAGATAGAATTGAAGCATTTTAGGCCAGTTAAACCCTTGGGAGCAGGAGATACTGGCAGTGTGTATTTGGTGGAGCTATGTGGAAGTGAACAATACTTTGCAATGAAGTCTATGCAGAAAGATGTGATGATGAATCGTAACAAAGTGCATAGAGCTTCCATAGAAAGACAAATCCTTGACATGTTGGATCACCCTTTTCTTCCTGCTTTATATGCTTCCTTTCAGACTCAAACACATATTTGTTTGATAACTGATTACTGCCCTGGTGGTGAATTATTCCTACTTCTTGATCGCCAGCCATCTAAGGTTCTCATGGAAGATGCTGCCAGATTTTATGCTGCTGAGGTAGTGGTTGCATTGGAGTACCTTCATTGTCAAGGAATAATTTACCGAGATCTGAAGCCAGAAAATGTGTTAATTCAGAGCAATGGACATGTTTCTCTAACAGATTTTGACTTATCATGTTTAACAACCAGCAAACCACAGCTTATAACTCCAACTACAAATGAAAAGAAGAAACATCAAAAGGTTCCAGAAACTCCAATGTTTATGGCAGAACCTATGAGAGAATCAAATTCTTTTGTTGGCACAGAAGAGTATATAGCTCCGGAAATTGTTACTGGTGCAGGACATACTAGTGCTGTCGATTGGTGGGCTCTAGGAATTCTTTTGTATGAAATGCTTTATGGATATACGCCATTCAGAGGAAAGAATAGGCAAAAAACATTTACAAATATTCTCAATAAAGATCTTAACTTTCCCACAAATAAACAGGTAAGTGGGCATGCAAAGCAATTAATGTATAAGTTGTTGCAGAAAGATCCCAAAAGCAGAATGGGTTCACAAGGAGGAGCTAATGAAATTAAGAAACACTCCTTCTTTCGGGGTGTTAATTGGGCCCTCGTTAGATGCATGAATCCTCCTTCGCTTGAGGTTCCTCTCTTTGAGAAAACGGAGGAAGAAGAGGAAGTAATAATAAAAGATGTAAATCCAGATATAGAAGAAATAAATGTCTTCTAG 2835 0.4275 MEEKSSSTTSFRRDSSGSLQVFNPSYSSREKPQNSPVRSQPPWKPWPEQSRTSRSAPSSEDTNASTSWEAAAQRAAEWGVVLRTDTETGKPLGVVARGGGSSSSSEVRVARGVPRVSEDVRDALSTFQQTFVVSDAMKADHPILYASGGFFNMTGYTSKEVIGRNCRFLQGVGTDPGEVAKIREALERGATYCGRLLNYKKDGTPFWNLLTVSPIKDQHGNLLKFIGMLVEVSKHTEGSKENMLRPNGLPESLIRYAAREKEKARSSAKELVEAMKMKRLPLPSFTDSGNNHHRPLAMSNNDAKTKKKKAPPPRALLRRKSDSSVITSSTRKSLPALAEHSRTNSSMHPPITHIPPLPLNNKLNKSRSRRRLSFMGFIRKSMSSYEEADEESFESEEDNNDDNVMMKEKRKGFDLATTLERIEKNFVITDPRLPDNPIIYASDSFLELTEYSREEILGRNCRFLQGPETDRATVRKIREAIDNQIEITVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHLEPLHNCIADDTAIEGQLLVKQTAENVDDAVRELPDANMKPEDLWMNHSKVVHPKPHRKDGAAWTAIQKILESGEEIELKHFRPVKPLGAGDTGSVYLVELCGSEQYFAMKSMQKDVMMNRNKVHRASIERQILDMLDHPFLPALYASFQTQTHICLITDYCPGGELFLLLDRQPSKVLMEDAARFYAAEVVVALEYLHCQGIIYRDLKPENVLIQSNGHVSLTDFDLSCLTTSKPQLITPTTNEKKKHQKVPETPMFMAEPMRESNSFVGTEEYIAPEIVTGAGHTSAVDWWALGILLYEMLYGYTPFRGKNRQKTFTNILNKDLNFPTNKQVSGHAKQLMYKLLQKDPKSRMGSQGGANEIKKHSFFRGVNWALVRCMNPPSLEVPLFEKTEEEEEVIIKDVNPDIEEINVF 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211812g00002 944 PANTHER FLIPPASE KINASE 1-RELATED 317 921 - -
Stsc211812g00002 944 MobiDBLite consensus disorder prediction 10 37 - -
Stsc211812g00002 944 ProSiteProfiles PAC domain profile. 190 244 IPR000700 -
Stsc211812g00002 944 SUPERFAMILY Protein kinase-like (PK-like) 597 921 IPR011009 -
Stsc211812g00002 944 MobiDBLite consensus disorder prediction 45 70 - -
Stsc211812g00002 944 Gene3D PAS domain 400 564 - -
Stsc211812g00002 944 ProSitePatterns Serine/Threonine protein kinases active-site signature. 733 745 IPR008271 GO:0004672|GO:0006468
Stsc211812g00002 944 SMART pac_2 488 530 IPR001610 -
Stsc211812g00002 944 SMART pac_2 193 235 IPR001610 -
Stsc211812g00002 944 SMART pas_2 118 191 IPR000014 -
Stsc211812g00002 944 SMART pas_2 413 482 IPR000014 -
Stsc211812g00002 944 Gene3D PAS domain 130 281 - -
Stsc211812g00002 944 MobiDBLite consensus disorder prediction 284 298 - -
Stsc211812g00002 944 Gene3D Phosphorylase Kinase; domain 1 611 695 - -
Stsc211812g00002 944 SMART serkin_6 612 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211812g00002 944 MobiDBLite consensus disorder prediction 281 365 - -
Stsc211812g00002 944 CDD STKc_phototropin_like 610 918 - -
Stsc211812g00002 944 Gene3D Transferase(Phosphotransferase) domain 1 696 913 - -
Stsc211812g00002 944 CDD PAS 426 526 IPR000014 -
Stsc211812g00002 944 NCBIfam PAS domain S-box protein 140 237 IPR000014 -
Stsc211812g00002 944 NCBIfam PAS domain S-box protein 436 526 IPR000014 -
Stsc211812g00002 944 ProSiteProfiles PAS repeat profile. 116 165 IPR000014 -
Stsc211812g00002 944 ProSiteProfiles Protein kinase domain profile. 612 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211812g00002 944 ProSiteProfiles PAC domain profile. 485 539 IPR000700 -
Stsc211812g00002 944 ProSiteProfiles PAS repeat profile. 415 484 IPR000014 -
Stsc211812g00002 944 SUPERFAMILY PYP-like sensor domain (PAS domain) 427 526 IPR035965 -
Stsc211812g00002 944 FunFam Putative LOV domain-containing protein 696 911 - -
Stsc211812g00002 944 FunFam LOV domain-containing protein 611 695 - -
Stsc211812g00002 944 MobiDBLite consensus disorder prediction 321 350 - -
Stsc211812g00002 944 SUPERFAMILY PYP-like sensor domain (PAS domain) 138 229 IPR035965 -
Stsc211812g00002 944 ProSitePatterns Protein kinases ATP-binding region signature. 618 641 IPR017441 GO:0005524
Stsc211812g00002 944 FunFam LOV domain-containing protein 400 564 - -
Stsc211812g00002 944 MobiDBLite consensus disorder prediction 1 70 - -
Stsc211812g00002 944 Pfam PAS domain 434 526 IPR000014 -
Stsc211812g00002 944 Pfam PAS domain 139 233 IPR000014 -
Stsc211812g00002 944 Pfam Protein kinase domain 615 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211812g00002 944 CDD PAS 143 232 IPR000014 -
Stsc211812g00002 944 FunFam Putative LOV domain-containing protein 130 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211812g00002 Stsc-Chr211812 5779 12330 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211812g00002 3 944 AGC Kinase Gene Family AT3G45780 61.268 0.0 1194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Stsc211812g00002 Pkinase 3.2e-65 CL0016