Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211810g00004 ATGTCTCTTAAGTGTGCTGTTGAATTAGGCATTCCTGATGCCATTCACAGCTATGGCAAACCTATGCCACTTTCCCAACTCATTACTTCGTTGAAAATTCCTCAATCAAAATCCTCTTTCGTCCATCGATTGATGAGAATCTTGGTCCACTCCAACTTCTTTACTACCACAAAAGTCACCAACAGTGACCACGAACTTGAAGTTGGATATGTTCTAACAGATTCGTCTATGCTATTGCTTAAGGATAACCCCTTAAATTTGATACGGTACTTGTTTATCCAACTTGATCCCTTTGTTATGAAACCATGGCACCAGATGTCTACATGGTTTAAAAATAATGATGATACTACATCATTATTTGAAACGGAATATGGGATTACGGTGTGGGATTATGCTAGGCAAGAGCCTAAATTCAACGAATTTTTTAATGATGCCATGGGAAGTGATGCTCGTTTGGTTAGCAAGTTGTTACTTGATGACAAGTGTAAAGGTGTGTTTGAGGGTTTGCAATCATTGGTTGATGTTGGTGGAGGTACTGGAACTGTTGCAAAGGCCATTGCCAAATCATTCCCACAGTTGGAGTGCACTGTTCTTGATCTTCCACATGTTGTTGCTGGCTTGGAAGGAACTGATAATCTCAGATATATTGGAGGAGACATGTTTCAGGCCATTCCTCCTTCTAATGCCATTTTGTTGAAGTGGATTTTGCATAACTGGAATGACGAGGAATGTTTGAAAATATTGAGGAACTGCAAAGAGGCACTACGCATGAGCAAAGGAGAAGGAAGTAAGGTTATTGTTATAGACATGGTGATGGGCGATGAGAAGAGAGATCACGAGTCAGTTGAAACACAACTCTTCTTCGACATGATGGTGATGGTGTACCTCACAGGAAAGCAAAGAAATAAAGAAGAATGGGCCAAGTTAATATTCTCAGCTGGTTTCAGCAACTACAAAATAATTCCAATTTTAGGATTAAGGTCTCTTATTGAGATATATCCATAG 1005 0.396 MSLKCAVELGIPDAIHSYGKPMPLSQLITSLKIPQSKSSFVHRLMRILVHSNFFTTTKVTNSDHELEVGYVLTDSSMLLLKDNPLNLIRYLFIQLDPFVMKPWHQMSTWFKNNDDTTSLFETEYGITVWDYARQEPKFNEFFNDAMGSDARLVSKLLLDDKCKGVFEGLQSLVDVGGGTGTVAKAIAKSFPQLECTVLDLPHVVAGLEGTDNLRYIGGDMFQAIPPSNAILLKWILHNWNDEECLKILRNCKEALRMSKGEGSKVIVIDMVMGDEKRDHESVETQLFFDMMVMVYLTGKQRNKEEWAKLIFSAGFSNYKIIPILGLRSLIEIYP 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211810g00004 334 Gene3D - 1 79 IPR036388 -
Stsc211810g00004 334 PANTHER O-METHYLTRANSFERASE 1 319 IPR016461 GO:0008168
Stsc211810g00004 334 Pfam O-methyltransferase domain 103 316 IPR001077 GO:0008171
Stsc211810g00004 334 Pfam Dimerisation domain 1 49 IPR012967 GO:0046983
Stsc211810g00004 334 SUPERFAMILY "Winged helix" DNA-binding domain 1 84 IPR036390 -
Stsc211810g00004 334 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 84 332 IPR029063 -
Stsc211810g00004 334 Gene3D Vaccinia Virus protein VP39 80 334 IPR029063 -
Stsc211810g00004 334 FunFam O-methyltransferase ZRP4 81 334 - -
Stsc211810g00004 334 PIRSF O-mtase 1 334 IPR016461 GO:0008168
Stsc211810g00004 334 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 334 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211810g00004 Stsc-Chr211810 25232 27233 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211810g00004 1 321 Monolignol Biosynthesis Gene Families AT5G54160 29.630 1.59e-47 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211810g00004 - K16040 aip:107609507 475.707